RNA–Protein interactions for RNA: YKL172W

EBP2, Transcript of Required for 25S rRNA maturation and 60S ribosomal subunit assembly, yeast

Gene EBP2, Length 1,284 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EBP2	YKL172W	SPP2	Q02521	185 aa		2.88	□□□□□ -1.95
EBP2	YKL172W	VBA1	Q04301	562 aa		2.88	□□□□□ -1.95
EBP2	YKL172W	FEX1	Q08913	375 aa		2.88	□□□□□ -1.95
EBP2	YKL172W	FEX2	Q08991	375 aa		2.88	□□□□□ -1.95
EBP2	YKL172W	PER33	Q12144	273 aa		2.88	□□□□□ -1.95
EBP2	YKL172W	ATG5	Q12380	294 aa		2.88	□□□□□ -1.95
EBP2	YKL172W	YOS9	Q99220	542 aa		2.88	□□□□□ -1.95
EBP2	YKL172W	NUP157	P40064	1391 aa	Known RBP	2.87	□□□□□ -1.95
EBP2	YKL172W	TDH1	P00360	332 aa	Known RBP	2.87	□□□□□ -1.95
EBP2	YKL172W	RPS3	P05750	240 aa	Known RBP	2.87	□□□□□ -1.95
EBP2	YKL172W	BMH1	P29311	267 aa	Known RBP	2.87	□□□□□ -1.95
EBP2	YKL172W	PPQ1	P32945	549 aa		2.87	□□□□□ -1.95
EBP2	YKL172W	YKR032W	P36127	104 aa		2.87	□□□□□ -1.95
EBP2	YKL172W	PET100	P38958	111 aa		2.87	□□□□□ -1.95
EBP2	YKL172W	FMP33	P46998	180 aa		2.87	□□□□□ -1.95
EBP2	YKL172W	EMC2	P47133	292 aa	Known RBP	2.87	□□□□□ -1.95
EBP2	YKL172W	IGO1	P53897	168 aa		2.87	□□□□□ -1.95
EBP2	YKL172W	SFH1	Q06168	426 aa		2.87	□□□□□ -1.95
EBP2	YKL172W	GMC2	Q06201	188 aa		2.87	□□□□□ -1.95
EBP2	YKL172W	YEL009C-A	A0A023PZF2	135 aa		2.86	□□□□□ -1.95
EBP2	YKL172W	UTR5	P32630	166 aa		2.86	□□□□□ -1.95
EBP2	YKL172W	YBL081W	P38180	368 aa	Known RBP	2.86	□□□□□ -1.95
EBP2	YKL172W	SPL2	P38839	148 aa		2.86	□□□□□ -1.95
EBP2	YKL172W	SUR2	P38992	349 aa		2.86	□□□□□ -1.95
EBP2	YKL172W	PEX31	P53203	462 aa		2.86	□□□□□ -1.95
EBP2	YKL172W	TIM21	P53220	239 aa		2.86	□□□□□ -1.95
EBP2	YKL172W	ISD11	Q6Q560	94 aa		2.86	□□□□□ -1.95
EBP2	YKL172W	KRE1	P17260	313 aa		2.85	□□□□□ -1.95
EBP2	YKL172W	SCC4	P40090	624 aa		2.85	□□□□□ -1.95
EBP2	YKL172W	TAD2	P47058	250 aa		2.85	□□□□□ -1.95
EBP2	YKL172W	LSB1	P53281	241 aa		2.85	□□□□□ -1.95
EBP2	YKL172W	SDC1	Q03323	175 aa		2.85	□□□□□ -1.95
EBP2	YKL172W	SSK22	P25390	1331 aa	Predicted RBP	2.85	□□□□□ -1.95
EBP2	YKL172W	RPL24A	P04449	155 aa	Known RBP	2.84	□□□□□ -1.95
EBP2	YKL172W	MET16	P18408	261 aa	Predicted RBP	2.84	□□□□□ -1.95
EBP2	YKL172W	RRT12	P25381	491 aa		2.84	□□□□□ -1.95
EBP2	YKL172W	NPT1	P39683	429 aa	Known RBP	2.84	□□□□□ -1.95
EBP2	YKL172W	KAP114	P53067	1004 aa		2.84	□□□□□ -1.95
EBP2	YKL172W	SYF2	P53277	215 aa	Predicted RBP	2.84	□□□□□ -1.95
EBP2	YKL172W	YNL095C	P53932	642 aa		2.84	□□□□□ -1.95
EBP2	YKL172W	PAN1	P32521	1480 aa		2.84	□□□□□ -1.96
EBP2	YKL172W	HIS3	P06633	220 aa		2.83	□□□□□ -1.96
EBP2	YKL172W	HSM3	P38348	480 aa		2.83	□□□□□ -1.96
EBP2	YKL172W	RCY1	P39531	840 aa		2.83	□□□□□ -1.96
EBP2	YKL172W	YER084W	P40057	128 aa		2.83	□□□□□ -1.96
EBP2	YKL172W	OST3	P48439	350 aa		2.83	□□□□□ -1.96
EBP2	YKL172W	FMP41	P53889	259 aa	Known RBP	2.83	□□□□□ -1.96
EBP2	YKL172W	RPL4A	P10664	362 aa	Known RBP	2.82	□□□□□ -1.96
EBP2	YKL172W	OM45	P16547	393 aa		2.82	□□□□□ -1.96
EBP2	YKL172W	POF1	P25576	258 aa		2.82	□□□□□ -1.96
EBP2	YKL172W	CSG2	P35206	410 aa		2.82	□□□□□ -1.96
EBP2	YKL172W	RTT105	P40063	208 aa		2.82	□□□□□ -1.96
EBP2	YKL172W	GPI8	P49018	411 aa		2.82	□□□□□ -1.96
EBP2	YKL172W	RPL4B	P49626	362 aa	Known RBP	2.82	□□□□□ -1.96
EBP2	YKL172W	CLP1	Q08685	445 aa	Predicted RBP	2.82	□□□□□ -1.96
EBP2	YKL172W	HMT1	P38074	348 aa		2.81	□□□□□ -1.96
EBP2	YKL172W	SPT8	P38915	602 aa		2.81	□□□□□ -1.96
EBP2	YKL172W	DDI1	P40087	428 aa		2.81	□□□□□ -1.96
EBP2	YKL172W	SER33	P40510	469 aa		2.81	□□□□□ -1.96
EBP2	YKL172W	YJR141W	P47172	347 aa	Predicted RBP	2.81	□□□□□ -1.96
EBP2	YKL172W	SLX9	P53251	210 aa	Predicted RBP	2.81	□□□□□ -1.96
EBP2	YKL172W	MNT4	P53745	580 aa		2.81	□□□□□ -1.96
EBP2	YKL172W	LOA1	Q06508	300 aa		2.81	□□□□□ -1.96
EBP2	YKL172W	CTR3	Q06686	241 aa		2.81	□□□□□ -1.96
EBP2	YKL172W	SMT3	Q12306	101 aa	Known RBP	2.81	□□□□□ -1.96
EBP2	YKL172W	AI5_BETA	Q9ZZX0	354 aa		2.81	□□□□□ -1.96
EBP2	YKL172W	STH1	P32597	1359 aa		2.81	□□□□□ -1.96
EBP2	YKL172W	ATG12	P38316	186 aa		2.8	□□□□□ -1.96
EBP2	YKL172W	ARN2	P38724	620 aa		2.8	□□□□□ -1.96
EBP2	YKL172W	COA1	P40452	197 aa		2.8	□□□□□ -1.96
EBP2	YKL172W	YPL039W	Q03080	316 aa		2.8	□□□□□ -1.96
EBP2	YKL172W	SME1	Q12330	94 aa	Predicted RBP	2.8	□□□□□ -1.96
EBP2	YKL172W	HIS1	P00498	297 aa	Known RBP	2.79	□□□□□ -1.96
EBP2	YKL172W	ARV1	Q06541	321 aa		2.79	□□□□□ -1.96
EBP2	YKL172W	RPP0	P05317	312 aa	Known RBP	2.78	□□□□□ -1.96
EBP2	YKL172W	SFC1	P33303	322 aa		2.78	□□□□□ -1.96
EBP2	YKL172W	MRPL37	P36532	105 aa		2.78	□□□□□ -1.96
EBP2	YKL172W	TEM1	P38987	245 aa		2.78	□□□□□ -1.96
EBP2	YKL172W	NBP35	P52920	328 aa		2.78	□□□□□ -1.96
EBP2	YKL172W	SWS2	P53937	143 aa		2.78	□□□□□ -1.96
EBP2	YKL172W	MIX17	Q03667	156 aa		2.78	□□□□□ -1.96
EBP2	YKL172W	FCF1	Q05498	189 aa	Predicted RBP	2.78	□□□□□ -1.96
EBP2	YKL172W	CDD1	Q06549	142 aa		2.78	□□□□□ -1.96
EBP2	YKL172W	YOL019W	Q08157	551 aa		2.78	□□□□□ -1.96
EBP2	YKL172W	DRE2	P36152	348 aa		2.77	□□□□□ -1.97
EBP2	YKL172W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	2.77	□□□□□ -1.97	not detected
EBP2	YKL172W	PRM9	P39551	298 aa		2.77	□□□□□ -1.97
EBP2	YKL172W	AGX1	P43567	385 aa		2.77	□□□□□ -1.97
EBP2	YKL172W	NIF3	P53081	288 aa		2.77	□□□□□ -1.97
EBP2	YKL172W	MPP6	P53725	186 aa	Predicted RBP	2.77	□□□□□ -1.97
EBP2	YKL172W	AGC1	Q12482	902 aa		2.77	□□□□□ -1.97
EBP2	YKL172W	YBL112C	Q3E7Y4	105 aa		2.77	□□□□□ -1.97
EBP2	YKL172W	COX2	P00410	251 aa		2.76	□□□□□ -1.97
EBP2	YKL172W	RAD3	P06839	778 aa		2.76	□□□□□ -1.97
EBP2	YKL172W	YJR012C	P47087	207 aa		2.76	□□□□□ -1.97
EBP2	YKL172W	AAH1	P53909	347 aa		2.76	□□□□□ -1.97
EBP2	YKL172W	CDC14	Q00684	551 aa		2.76	□□□□□ -1.97
EBP2	YKL172W	ATC1	Q04005	294 aa		2.76	□□□□□ -1.97
EBP2	YKL172W	ADH6	Q04894	360 aa	Known RBP	2.76	□□□□□ -1.97
EBP2	YKL172W	PEX10	Q05568	337 aa		2.76	□□□□□ -1.97

Retrieved 100 of 5,963 RNA–protein pairs in 21.5 ms