RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	YCR022C	P25620	114 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	NUP2	P32499	720 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	PMU1	P36069	295 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	YHR177W	P38867	453 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	SOP4	P39543	234 aa	Predicted RBP	3.44	□□□□□ -1.86
UBX5	YDR330W	SSO2	P39926	295 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	STE24	P47154	453 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	RBL2	P48606	106 aa	Known RBP	3.44	□□□□□ -1.86
UBX5	YDR330W	PMT5	P52867	743 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	NBP35	P52920	328 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	PXR1	P53335	271 aa	Predicted RBP	3.44	□□□□□ -1.86
UBX5	YDR330W	COG5	P53951	403 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	APC4	Q04601	652 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	YDL114W	Q07530	308 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	LDS2	Q08218	356 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	SRL1	Q08673	210 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	TPT1	Q12272	230 aa	Known RBP	3.44	□□□□□ -1.86
UBX5	YDR330W	GLE1	Q12315	538 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	IES3	Q12345	250 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	RAD51	P25454	400 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	PUT3	P25502	979 aa	Predicted RBP	3.43	□□□□□ -1.86
UBX5	YDR330W	MSK1	P32048	576 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	MGM101	P32787	269 aa	Known RBP	3.43	□□□□□ -1.86
UBX5	YDR330W	TPO5	P36029	618 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	MTC4	P38335	694 aa	Known RBP	3.43	□□□□□ -1.86
UBX5	YDR330W	TAE1	P38340	232 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	IPT1	P38954	527 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	SPO73	P40031	143 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	RTT105	P40063	208 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	COG3	P40094	801 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	BIR1	P47134	954 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	BIO3	P50277	480 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	PRM8	P53174	237 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	ERV25	P54837	211 aa	Known RBP	3.43	□□□□□ -1.86
UBX5	YDR330W	YMR181C	Q03231	154 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	ATG38	Q05789	226 aa	Known RBP	3.43	□□□□□ -1.86
UBX5	YDR330W	SPO77	Q06134	477 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	RPN8	Q08723	338 aa	Known RBP	3.43	□□□□□ -1.86
UBX5	YDR330W	VPS68	Q12016	184 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	YLR126C	Q12288	251 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	TRM10	Q12400	293 aa		3.43	□□□□□ -1.86
UBX5	YDR330W	SLH1	P53327	1967 aa	Known RBP	3.42	□□□□□ -1.86
UBX5	YDR330W	REP1	P03871	373 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	MRS3	P10566	314 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	MER1	P16523	270 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	RPS1B	P23248	255 aa	Known RBP	3.42	□□□□□ -1.86
UBX5	YDR330W	PET18	P25362	215 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	ITR1	P30605	584 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	ITR2	P30606	609 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	GDH2	P33327	1092 aa	Known RBP	3.42	□□□□□ -1.86
UBX5	YDR330W	LHP1	P33399	275 aa	Known RBP	3.42	□□□□□ -1.86
UBX5	YDR330W	YBR139W	P38109	508 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	FES1	P38260	290 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	YND1	P40009	630 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	PRE6	P40303	254 aa	Known RBP	3.42	□□□□□ -1.86
UBX5	YDR330W	AIM20	P40451	204 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	APQ12	P40532	138 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	SPG5	P42933	373 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	SFH5	P47008	294 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	YPL068C	Q02749	293 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	GAL83	Q04739	417 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	ERP1	Q05359	219 aa	Known RBP	3.42	□□□□□ -1.86
UBX5	YDR330W	PLB3	Q08108	686 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	PST2	Q12335	198 aa	Known RBP	3.42	□□□□□ -1.86
UBX5	YDR330W	SET6	Q12529	373 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	YIL002W-A	Q3E7Z5	69 aa		3.42	□□□□□ -1.86
UBX5	YDR330W	RPS14A	P06367	137 aa	Known RBP	3.41	□□□□□ -1.86
UBX5	YDR330W	HXT2	P23585	541 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	3.41	□□□□□ -1.86	not detected
UBX5	YDR330W	MSB2	P32334	1306 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	MEI5	P32489	222 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	SSO1	P32867	290 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	YKL097C	P34245	136 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	RIB5	P38145	238 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	RPS14B	P39516	138 aa	Known RBP	3.41	□□□□□ -1.86
UBX5	YDR330W	AST2	P39945	430 aa	Known RBP	3.41	□□□□□ -1.86
UBX5	YDR330W	SOK1	P40317	901 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	LYS12	P40495	371 aa	Known RBP	3.41	□□□□□ -1.86
UBX5	YDR330W	YGR201C	P42936	225 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	PRM10	P42946	383 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	PAC10	P48363	199 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	YGL114W	P53134	725 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	YKR005C	Q02203	525 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	GRX5	Q02784	150 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	ABZ2	Q03266	374 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	TRM82	Q03774	444 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	GPI17	Q04080	534 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	YLR036C	Q07986	203 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	SAM4	Q08985	325 aa	Known RBP	3.41	□□□□□ -1.86
UBX5	YDR330W	AYT1	Q12226	474 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	SFM1	Q12314	213 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	YOP1	Q12402	180 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	RRP12	Q12754	1228 aa	Known RBP	3.41	□□□□□ -1.86
UBX5	YDR330W	CCH1	P50077	2039 aa		3.41	□□□□□ -1.86
UBX5	YDR330W	SPT15	P13393	240 aa	Known RBP	3.4	□□□□□ -1.86
UBX5	YDR330W	CDC23	P16522	626 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	MKK1	P32490	508 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	RIB7	P33312	244 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	MRPL37	P36532	105 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	NAT2	P37293	288 aa		3.4	□□□□□ -1.86

Retrieved 100 of 5,963 RNA–protein pairs in 23.6 ms