RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 DSC1Q08554 894 aa16.33■□□□□ 0.2
CLN3-249ENST00000636685 USP41Q3LFD5 358 aa16.33■□□□□ 0.2
CLN3-249ENST00000636685 AASDHQ4L235 1098 aaPredicted RBP16.33■□□□□ 0.2
CLN3-249ENST00000636685 PRR16Q569H4 304 aa16.33■□□□□ 0.2
CLN3-249ENST00000636685 FUT10Q6P4F1 479 aa16.33■□□□□ 0.2
CLN3-249ENST00000636685 PRSS55Q6UWB4 352 aaPredicted RBP16.33■□□□□ 0.2
CLN3-249ENST00000636685 UNQ6494/PRO21346Q6UXR6 183 aa16.33■□□□□ 0.2
CLN3-249ENST00000636685 TEX2Q8IWB9 1127 aa16.33■□□□□ 0.2
CLN3-249ENST00000636685 NPAS3Q8IXF0 933 aa16.33■□□□□ 0.2
CLN3-249ENST00000636685 ING5Q8WYH8 240 aa16.33■□□□□ 0.2
CLN3-249ENST00000636685 SETXQ7Z333 2677 aaKnown RBP16.32■□□□□ 0.2
CLN3-249ENST00000636685 CHURC1-FNTBB4DL54 471 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 CHMP2AO43633 222 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 HNRNPA1P09651 372 aaKnown RBP eCLIP16.32■□□□□ 0.2
CLN3-249ENST00000636685 NCLP19338 710 aaKnown RBP16.32■□□□□ 0.2
CLN3-249ENST00000636685 HOXA11P31270 313 aaPredicted RBP16.32■□□□□ 0.2
CLN3-249ENST00000636685 FNTBP49356 437 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 LIMK1P53667 647 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 SATB1Q01826 763 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 PPP2R5DQ14738 602 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 SF3A2Q15428 464 aaKnown RBP16.32■□□□□ 0.2
CLN3-249ENST00000636685 PPM1LQ5SGD2 360 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 MAMSTRQ6ZN01 415 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 CHD1LQ86WJ1 897 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 MICU3Q86XE3 530 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 TMTC2Q8N394 836 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 SMG8Q8ND04 991 aaKnown RBP16.32■□□□□ 0.2
CLN3-249ENST00000636685 RABGGTAQ92696 567 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 GAD1Q99259 594 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 COLEC11Q9BWP8 271 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 RNF39Q9H2S5 420 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 IFT122Q9HBG6 1241 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 HCFC1R1Q9NWW0 138 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 SLC12A7Q9Y666 1083 aa16.32■□□□□ 0.2
CLN3-249ENST00000636685 TICRRQ7Z2Z1 1910 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 ARL5CA6NH57 179 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 FOXD2O60548 495 aaPredicted RBP16.31■□□□□ 0.2
CLN3-249ENST00000636685 ECI2O75521 394 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 C8AP07357 584 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 ITGA4P13612 1032 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 MLH1P40692 756 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 SCNN1GP51170 649 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 CCR3P51677 355 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 LIN9Q5TKA1 542 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 ZFP42Q96MM3 310 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 MTA3Q9BTC8 594 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 NIFKQ9BYG3 293 aaKnown RBP16.31■□□□□ 0.2
CLN3-249ENST00000636685 LRRC2Q9BYS8 371 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 LMAN1LQ9HAT1 526 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 RXFP3Q9NSD7 469 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 COL4A2P08572 1712 aa16.31■□□□□ 0.2
CLN3-249ENST00000636685 SOBPA7XYQ1 873 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 STBD1O95210 358 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 LIFRP42702 1097 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 CREMQ03060 361 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 CCDC6Q16204 474 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 RTP2Q5QGT7 225 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 TANGO2Q6ICL3 276 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 POTEHQ6S545 545 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 GPR65Q8IYL9 337 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 FAM160A2Q8N612 972 aaPredicted RBP16.3■□□□□ 0.2
CLN3-249ENST00000636685 KDF1Q8NAX2 398 aaPredicted RBP16.3■□□□□ 0.2
CLN3-249ENST00000636685 LENG9Q96B70 501 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 MCRS1Q96EZ8 462 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 TMEM87BQ96K49 555 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 GLT8D2Q9H1C3 349 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 MINDY3Q9H8M7 445 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 BARHL2Q9NY43 387 aa16.3■□□□□ 0.2
CLN3-249ENST00000636685 V9GY48 417 aaPredicted RBP16.3■□□□□ 0.2
CLN3-249ENST00000636685 MAN2B1O00754 1011 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 XYLBO75191 536 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 MAFO75444 373 aaPredicted RBP16.29■□□□□ 0.2
CLN3-249ENST00000636685 NR1I2O75469 434 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 KCNK5O95279 499 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 MCM5P33992 734 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 CXCL12P48061 93 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 GRM2Q14416 872 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 PABPC1LQ4VXU2 614 aaKnown RBP16.29■□□□□ 0.2
CLN3-249ENST00000636685 XKR3Q5GH77 459 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 SMC5Q8IY18 1101 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 DNASE1L2Q92874 299 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 GJA10Q969M2 543 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 CLSTN3Q9BQT9 956 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 IER2Q9BTL4 223 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 EIF2AQ9BY44 585 aaKnown RBP16.29■□□□□ 0.2
CLN3-249ENST00000636685 UNC45AQ9H3U1 944 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 UBN1Q9NPG3 1134 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 DNMT3BQ9UBC3 853 aaKnown RBP16.29■□□□□ 0.2
CLN3-249ENST00000636685 ADAM28Q9UKQ2 775 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 HES2Q9Y543 173 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 IPPQ9Y573 584 aa16.29■□□□□ 0.2
CLN3-249ENST00000636685 WDFY3Q8IZQ1 3526 aa16.28■□□□□ 0.2
CLN3-249ENST00000636685 VWA8A3KMH1 1905 aa16.28■□□□□ 0.2
CLN3-249ENST00000636685 ADAM12O43184 909 aa16.28■□□□□ 0.2
CLN3-249ENST00000636685 HOXA9P31269 272 aa16.28■□□□□ 0.2
CLN3-249ENST00000636685 NUCB1Q02818 461 aa16.28■□□□□ 0.2
CLN3-249ENST00000636685 FUT2Q10981 343 aa16.28■□□□□ 0.2
CLN3-249ENST00000636685 GAS6Q14393 721 aa16.28■□□□□ 0.2
CLN3-249ENST00000636685 STPG1Q5TH74 334 aa16.28■□□□□ 0.2
CLN3-249ENST00000636685 HEATR6Q6AI08 1181 aaKnown RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms