RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 TBC1D7Q9P0N9 293 aa19.96■□□□□ 0.79
LIG1-216ENST00000598938 TTC3P53804 2025 aa19.95■□□□□ 0.78
LIG1-216ENST00000598938 KINO60870 393 aaKnown RBP19.95■□□□□ 0.78
LIG1-216ENST00000598938 ZNF623O75123 536 aa19.95■□□□□ 0.78
LIG1-216ENST00000598938 STAG3L1P0CL83 205 aa19.95■□□□□ 0.78
LIG1-216ENST00000598938 SKIP12755 728 aa19.95■□□□□ 0.78
LIG1-216ENST00000598938 ATF7P17544 494 aaPredicted RBP19.95■□□□□ 0.78
LIG1-216ENST00000598938 CASP5P51878 434 aa19.95■□□□□ 0.78
LIG1-216ENST00000598938 ALCAMQ13740 583 aa19.95■□□□□ 0.78
LIG1-216ENST00000598938 ZC2HC1CQ53FD0 456 aaPredicted RBP19.95■□□□□ 0.78
LIG1-216ENST00000598938 ATF7IP2Q5U623 682 aa19.95■□□□□ 0.78
LIG1-216ENST00000598938 SLC27A1Q6PCB7 646 aa19.95■□□□□ 0.78
LIG1-216ENST00000598938 ZNF598Q86UK7 904 aaKnown RBP19.95■□□□□ 0.78
LIG1-216ENST00000598938 MAP4K3Q8IVH8 894 aa19.95■□□□□ 0.78
LIG1-216ENST00000598938 HPS3Q969F9 1004 aa19.95■□□□□ 0.78
LIG1-216ENST00000598938 TARS2Q9BW92 718 aaKnown RBP19.95■□□□□ 0.78
LIG1-216ENST00000598938 EIF2AQ9BY44 585 aaKnown RBP19.95■□□□□ 0.78
LIG1-216ENST00000598938 TMEM161AQ9NX61 479 aa19.95■□□□□ 0.78
LIG1-216ENST00000598938 TNFSF13BQ9Y275 285 aa19.95■□□□□ 0.78
LIG1-216ENST00000598938 PI4K2BG5E9Z4 385 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 GOLGA6L22H0YM25 854 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 UPP2O95045 317 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 GCNT3O95395 438 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 EOMESO95936 686 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 PIGRP01833 764 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 RPN1P04843 607 aaKnown RBP19.94■□□□□ 0.78
LIG1-216ENST00000598938 MYBP10242 640 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 HTRA4P83105 476 aaPredicted RBP19.94■□□□□ 0.78
LIG1-216ENST00000598938 TMEM132AQ24JP5 1023 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 FAM26FQ5R3K3 315 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 EEF1DP3Q658K8 133 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 ZPBP2Q6X784 338 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 MRPL10Q7Z7H8 261 aaKnown RBP19.94■□□□□ 0.78
LIG1-216ENST00000598938 CDR2LQ86X02 465 aaPredicted RBP19.94■□□□□ 0.78
LIG1-216ENST00000598938 PTPRHQ9HD43 1115 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 PCDHB7Q9Y5E2 793 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 PCDHB2Q9Y5E7 798 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 PCDHB13Q9Y5F0 798 aa19.94■□□□□ 0.78
LIG1-216ENST00000598938 ABLIM1O14639 778 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 NPTXRO95502 500 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 PROZP22891 400 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 PNOCQ13519 176 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 KMT5BQ4FZB7 885 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 L1TD1Q5T7N2 865 aaKnown RBP19.93■□□□□ 0.78
LIG1-216ENST00000598938 FAM117BQ6P1L5 589 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 EPM2AIP1Q7L775 607 aaPredicted RBP19.93■□□□□ 0.78
LIG1-216ENST00000598938 SMG8Q8ND04 991 aaKnown RBP19.93■□□□□ 0.78
LIG1-216ENST00000598938 GLIS3Q8NEA6 775 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 RAD9AQ99638 391 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 ZBED2Q9BTP6 218 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 RC3H2Q9HBD1 1191 aaKnown RBP19.93■□□□□ 0.78
LIG1-216ENST00000598938 EXOC1Q9NV70 894 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 HOOK1Q9UJC3 728 aaKnown RBP19.93■□□□□ 0.78
LIG1-216ENST00000598938 LRFN2Q9ULH4 789 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 COL4A6Q14031 1691 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 MUC6Q6W4X9 2439 aa19.93■□□□□ 0.78
LIG1-216ENST00000598938 EIF3DO15371 548 aaKnown RBP eCLIP19.92■□□□□ 0.78
LIG1-216ENST00000598938 DGKIO75912 1065 aa19.92■□□□□ 0.78
LIG1-216ENST00000598938 RHOBTB3O94955 611 aa19.92■□□□□ 0.78
LIG1-216ENST00000598938 IBSPP21815 317 aaPredicted RBP19.92■□□□□ 0.78
LIG1-216ENST00000598938 ERVK-21P61565 698 aa19.92■□□□□ 0.78
LIG1-216ENST00000598938 PSMD2Q13200 908 aa19.92■□□□□ 0.78
LIG1-216ENST00000598938 SPATA20Q8TB22 786 aa19.92■□□□□ 0.78
LIG1-216ENST00000598938 ZNF689Q96CS4 500 aaPredicted RBP19.92■□□□□ 0.78
LIG1-216ENST00000598938 TGS1Q96RS0 853 aaKnown RBP19.92■□□□□ 0.78
LIG1-216ENST00000598938 ADPGKQ9BRR6 497 aa19.92■□□□□ 0.78
LIG1-216ENST00000598938 C11orf16Q9NQ32 467 aa19.92■□□□□ 0.78
LIG1-216ENST00000598938 RNF19AQ9NV58 838 aa19.92■□□□□ 0.78
LIG1-216ENST00000598938 IPPQ9Y573 584 aa19.92■□□□□ 0.78
LIG1-216ENST00000598938 LCHNA4D1U4 455 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 TOM1L1O75674 476 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 KCNA1Q09470 495 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 KCNB1Q14721 858 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 DCAF4L1Q3SXM0 396 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 MPZL3Q6UWV2 235 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 STXBP4Q6ZWJ1 553 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 GDPD5Q8WTR4 605 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 PGBD4Q96DM1 585 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 BICD1Q96G01 975 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 ACCSQ96QU6 501 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 TRIM6Q9C030 488 aaPredicted RBP19.91■□□□□ 0.78
LIG1-216ENST00000598938 CDT1Q9H211 546 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 UBE2ZQ9H832 354 aaPredicted RBP19.91■□□□□ 0.78
LIG1-216ENST00000598938 SLC39A2Q9NP94 309 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 INSL6Q9Y581 213 aa19.91■□□□□ 0.78
LIG1-216ENST00000598938 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.9■□□□□ 0.78
LIG1-216ENST00000598938 HNRNPDLO14979 420 aaKnown RBP19.9■□□□□ 0.78
LIG1-216ENST00000598938 HOXA2O43364 376 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 FGFR1P11362 822 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 LIG4P49917 911 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 MCL1Q07820 350 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 STK4Q13043 487 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 LEXMQ3ZCV2 418 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 ZNF568Q3ZCX4 644 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 SLC39A4Q6P5W5 647 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 APBB1IPQ7Z5R6 666 aaPredicted RBP19.9■□□□□ 0.78
LIG1-216ENST00000598938 RNF169Q8NCN4 708 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 ZNF507Q8TCN5 953 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 SP7Q8TDD2 431 aaPredicted RBP19.9■□□□□ 0.78
LIG1-216ENST00000598938 KHSRPQ92945 711 aaKnown RBP eCLIP19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms