RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 DHX58Q96C10 678 aa12.26□□□□□ -0.45
VRK3-210ENST00000596121 ZNF558Q96NG5 402 aa12.26□□□□□ -0.45
VRK3-210ENST00000596121 VN1R3Q9BXE9 311 aa12.26□□□□□ -0.45
VRK3-210ENST00000596121 FGFBP2Q9BYJ0 223 aa12.26□□□□□ -0.45
VRK3-210ENST00000596121 GBP3Q9H0R5 595 aa12.26□□□□□ -0.45
VRK3-210ENST00000596121 CDT1Q9H211 546 aa12.26□□□□□ -0.45
VRK3-210ENST00000596121 IKZF4Q9H2S9 585 aa12.26□□□□□ -0.45
VRK3-210ENST00000596121 PARVGQ9HBI0 331 aa12.26□□□□□ -0.45
VRK3-210ENST00000596121 PCDHB12Q9Y5F1 795 aa12.26□□□□□ -0.45
VRK3-210ENST00000596121 PLXNA4Q9HCM2 1894 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 F8W810 466 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 PTGESO14684 152 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 TRAK2O60296 914 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 ZC3H11AO75152 810 aaKnown RBP eCLIP12.25□□□□□ -0.45
VRK3-210ENST00000596121 IGFBP6P24592 240 aaPredicted RBP12.25□□□□□ -0.45
VRK3-210ENST00000596121 CASP1P29466 404 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 GTF2F1P35269 517 aaKnown RBP eCLIP12.25□□□□□ -0.45
VRK3-210ENST00000596121 PLCB3Q01970 1234 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 DSC1Q08554 894 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 ADGRD2Q7Z7M1 963 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 SFR1Q86XK3 245 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 COLGALT2Q8IYK4 626 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 THNSL1Q8IYQ7 743 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 STRA6Q9BX79 667 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 MRPL9Q9BYD2 267 aaKnown RBP12.25□□□□□ -0.45
VRK3-210ENST00000596121 MRPL4Q9BYD3 311 aaKnown RBP12.25□□□□□ -0.45
VRK3-210ENST00000596121 TRIM6Q9C030 488 aaPredicted RBP12.25□□□□□ -0.45
VRK3-210ENST00000596121 LMAN2LQ9H0V9 348 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 ZHX3Q9H4I2 956 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 GDPD2Q9HCC8 539 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 AAASQ9NRG9 546 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 KBTBD4Q9NVX7 518 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 SPG21Q9NZD8 308 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 LARSQ9P2J5 1176 aaKnown RBP12.25□□□□□ -0.45
VRK3-210ENST00000596121 CACNG4Q9UBN1 327 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 PARP2Q9UGN5 583 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 GIT1Q9Y2X7 761 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 MYH11P35749 1972 aa12.25□□□□□ -0.45
VRK3-210ENST00000596121 FRMD3A2A2Y4 597 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 TISP43B9A030 160 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 FSCN2O14926 492 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 POLR2DO15514 142 aaKnown RBP12.24□□□□□ -0.45
VRK3-210ENST00000596121 RECQL4O94761 1208 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 SMTNP53814 917 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 KRT85P78386 507 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 GTF2BQ00403 316 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 TCHHQ07283 1943 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 NAB2Q15742 525 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 PTPROQ16827 1216 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 TMEM132AQ24JP5 1023 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 SEZ6Q53EL9 994 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 SLC39A4Q6P5W5 647 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 ZNF720Q7Z2F6 126 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 GLIS3Q8NEA6 775 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 RABGGTAQ92696 567 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 HPS3Q969F9 1004 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 SPATA32Q96LK8 384 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 UBN1Q9NPG3 1134 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 TBC1D7Q9P0N9 293 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 TBX20Q9UMR3 447 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 GDAQ9Y2T3 454 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 VCANP13611 3396 aa12.24□□□□□ -0.45
VRK3-210ENST00000596121 A0A1B0GVL5 298 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 ANKRD63C9JTQ0 380 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 K7ENM7 598 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 NRP1O14786 923 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 TBCAO75347 108 aaKnown RBP12.23□□□□□ -0.45
VRK3-210ENST00000596121 PPP1R37O75864 691 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 ALDH7A1P49419 539 aaKnown RBP12.23□□□□□ -0.45
VRK3-210ENST00000596121 CASP5P51878 434 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 OSTNP61366 133 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 TFF2Q03403 129 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 RNASELQ05823 741 aaKnown RBP12.23□□□□□ -0.45
VRK3-210ENST00000596121 KCNA1Q09470 495 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 HYAL1Q12794 435 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 COL19A1Q14993 1142 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 DCAF4L1Q3SXM0 396 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 ZNF568Q3ZCX4 644 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 ZBTB41Q5SVQ8 909 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 ADALQ6DHV7 355 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 MPZL3Q6UWV2 235 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 ALKAL1Q6UXT8 129 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.23□□□□□ -0.45
VRK3-210ENST00000596121 GRAMD1CQ8IYS0 662 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 TMEM130Q8N3G9 435 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 IQUBQ8NA54 791 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 SLC17A8Q8NDX2 589 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 URGCPQ8TCY9 931 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 MRPS27Q92552 414 aaKnown RBP12.23□□□□□ -0.45
VRK3-210ENST00000596121 IGSF21Q96ID5 467 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 PAAF1Q9BRP4 392 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 TRIM9Q9C026 710 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 ST6GALNAC4Q9H4F1 302 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 NSUN3Q9H649 340 aaKnown RBP12.23□□□□□ -0.45
VRK3-210ENST00000596121 MARCH5Q9NX47 278 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 KANSL3Q9P2N6 904 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 SERTAD1Q9UHV2 236 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 KCNG1Q9UIX4 513 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 KCNH3Q9ULD8 1083 aa12.23□□□□□ -0.45
VRK3-210ENST00000596121 HPSEQ9Y251 543 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms