RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 PIK3R6Q5UE93 754 aa6.38□□□□□ -1.39
SMCHD1-207ENST00000581711 CNNM4Q6P4Q7 775 aa6.38□□□□□ -1.39
SMCHD1-207ENST00000581711 KIAA0907Q7Z7F0 614 aaPredicted RBP6.38□□□□□ -1.39
SMCHD1-207ENST00000581711 SYNPOQ8N3V7 929 aa6.38□□□□□ -1.39
SMCHD1-207ENST00000581711 NINJ1Q92982 152 aa6.38□□□□□ -1.39
SMCHD1-207ENST00000581711 ELF4Q99607 663 aaPredicted RBP6.38□□□□□ -1.39
SMCHD1-207ENST00000581711 FEZ1Q99689 392 aa6.38□□□□□ -1.39
SMCHD1-207ENST00000581711 SPON1Q9HCB6 807 aa6.38□□□□□ -1.39
SMCHD1-207ENST00000581711 SETD1BQ9UPS6 1966 aaKnown RBP6.38□□□□□ -1.39
SMCHD1-207ENST00000581711 B4E1Z4 1266 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 SPDEFO95238 335 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 LY86O95711 162 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 HSP90B1P14625 803 aaKnown RBP6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 SLC9A1P19634 815 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 DUSP2Q05923 314 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 MPP3Q13368 585 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 BTNL9Q6UXG8 535 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 NIM1KQ8IY84 436 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 OR10H5Q8NGA6 315 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 CAGE1Q8TC20 777 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 SLC9A6Q92581 669 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 CABP5Q9NP86 173 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 USP36Q9P275 1121 aaKnown RBP6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 RNF7Q9UBF6 113 aa6.37□□□□□ -1.39
SMCHD1-207ENST00000581711 MARCH11A6NNE9 402 aa6.36□□□□□ -1.39
SMCHD1-207ENST00000581711 PCDH8O95206 1070 aa6.36□□□□□ -1.39
SMCHD1-207ENST00000581711 HLA-DOAP06340 250 aa6.36□□□□□ -1.39
SMCHD1-207ENST00000581711 EGR2P11161 476 aaPredicted RBP6.36□□□□□ -1.39
SMCHD1-207ENST00000581711 MPLP40238 635 aa6.36□□□□□ -1.39
SMCHD1-207ENST00000581711 DRICH1Q6PGQ1 229 aaPredicted RBP6.36□□□□□ -1.39
SMCHD1-207ENST00000581711 SRRM1Q8IYB3 904 aaKnown RBP6.36□□□□□ -1.39
SMCHD1-207ENST00000581711 SLC44A3Q8N4M1 653 aa6.36□□□□□ -1.39
SMCHD1-207ENST00000581711 SCARB1Q8WTV0 552 aa6.36□□□□□ -1.39
SMCHD1-207ENST00000581711 RTF1Q92541 710 aaKnown RBP6.36□□□□□ -1.39
SMCHD1-207ENST00000581711 MAGEC2Q9UBF1 373 aaPredicted RBP6.36□□□□□ -1.39
SMCHD1-207ENST00000581711 KPNA6O60684 536 aa6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 RBMXL2O75526 392 aaKnown RBP6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 IGLV2-14P01704 120 aa6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 SPATA31D3P0C874 917 aa6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 GYS2P54840 703 aa6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 NHLH1Q02575 133 aa6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 DDB1Q16531 1140 aa6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 CDCA2Q69YH5 1023 aaPredicted RBP6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 SPATA31D4Q6ZUB0 917 aa6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 LRRTM3Q86VH5 581 aa6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 MSL3Q8N5Y2 521 aaKnown RBP6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 DUSP26Q9BV47 211 aa6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 TARS2Q9BW92 718 aaKnown RBP6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 MAP3K2Q9Y2U5 619 aa6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 PCDHB6Q9Y5E3 794 aa6.35□□□□□ -1.39
SMCHD1-207ENST00000581711 COL3A1P02461 1466 aaPredicted RBP6.34□□□□□ -1.39
SMCHD1-207ENST00000581711 MAST3O60307 1309 aa6.34□□□□□ -1.39
SMCHD1-207ENST00000581711 MYPNQ86TC9 1320 aa6.34□□□□□ -1.39
SMCHD1-207ENST00000581711 MATN4O95460 622 aa6.34□□□□□ -1.39
SMCHD1-207ENST00000581711 NEK4P51957 841 aa6.34□□□□□ -1.39
SMCHD1-207ENST00000581711 PCBP1Q15365 356 aaKnown RBP eCLIP6.34□□□□□ -1.39
SMCHD1-207ENST00000581711 CFAP100Q494V2 611 aa6.34□□□□□ -1.39
SMCHD1-207ENST00000581711 TAS1R1Q7RTX1 841 aa6.34□□□□□ -1.39
SMCHD1-207ENST00000581711 SMG7Q92540 1137 aaKnown RBP6.34□□□□□ -1.39
SMCHD1-207ENST00000581711 ANKS1AQ92625 1134 aa6.34□□□□□ -1.39
SMCHD1-207ENST00000581711 MTFR1LQ9H019 292 aa6.34□□□□□ -1.39
SMCHD1-207ENST00000581711 SALL3Q9BXA9 1300 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 DNAJC9-AS1A6NH13 148 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 ITGAMP11215 1152 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 HSD3B2P26439 372 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 RESTQ13127 1097 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 CREB3L3Q68CJ9 461 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 NXPE1Q8N323 547 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 CDYL2Q8N8U2 506 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 MFSD3Q96ES6 412 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 FDXACB1Q9BRP7 624 aaPredicted RBP6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 KIAA1586Q9HCI6 787 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 TOMM22Q9NS69 142 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 RNF181Q9P0P0 153 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 B4GALT6Q9UBX8 382 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 SPO11Q9Y5K1 396 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 FPGT-TNNI3KV9GXZ4 949 aa6.33□□□□□ -1.4
SMCHD1-207ENST00000581711 A0A087X0B3 334 aa6.32□□□□□ -1.4
SMCHD1-207ENST00000581711 ZNF891A8MT65 544 aaPredicted RBP6.32□□□□□ -1.4
SMCHD1-207ENST00000581711 SEC24DO94855 1032 aaPredicted RBP6.32□□□□□ -1.4
SMCHD1-207ENST00000581711 RBP3P10745 1247 aa6.32□□□□□ -1.4
SMCHD1-207ENST00000581711 MGAT1P26572 445 aa6.32□□□□□ -1.4
SMCHD1-207ENST00000581711 ANKS6Q68DC2 871 aa6.32□□□□□ -1.4
SMCHD1-207ENST00000581711 UBE2R2Q712K3 238 aaPredicted RBP6.32□□□□□ -1.4
SMCHD1-207ENST00000581711 ZNF384Q8TF68 577 aa6.32□□□□□ -1.4
SMCHD1-207ENST00000581711 PLAAQ9Y263 795 aa6.32□□□□□ -1.4
SMCHD1-207ENST00000581711 B5MCH6 92 aa6.31□□□□□ -1.4
SMCHD1-207ENST00000581711 CBX4O00257 560 aa6.31□□□□□ -1.4
SMCHD1-207ENST00000581711 ELL2O00472 640 aaPredicted RBP6.31□□□□□ -1.4
SMCHD1-207ENST00000581711 MYCLP1P12525 358 aaPredicted RBP6.31□□□□□ -1.4
SMCHD1-207ENST00000581711 CTGFP29279 349 aa6.31□□□□□ -1.4
SMCHD1-207ENST00000581711 FLT3P36888 993 aa6.31□□□□□ -1.4
SMCHD1-207ENST00000581711 SEPT7Q16181 437 aaKnown RBP6.31□□□□□ -1.4
SMCHD1-207ENST00000581711 FAM102AQ5T9C2 384 aaPredicted RBP6.31□□□□□ -1.4
SMCHD1-207ENST00000581711 EFCAB12Q6NXP0 572 aa6.31□□□□□ -1.4
SMCHD1-207ENST00000581711 ZZZ3Q8IYH5 903 aa6.31□□□□□ -1.4
SMCHD1-207ENST00000581711 ZMAT4Q9H898 229 aa6.31□□□□□ -1.4
SMCHD1-207ENST00000581711 H2AFY2Q9P0M6 372 aaPredicted RBP6.31□□□□□ -1.4
SMCHD1-207ENST00000581711 USP15Q9Y4E8 981 aaPredicted RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms