RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 AEBP2Q6ZN18 517 aaPredicted RBP35.5■■■■□ 3.27
SMCHD1-207ENST00000581711 CHIC1Q5VXU3 224 aa33.54■■■□□ 2.96
SMCHD1-207ENST00000581711 SENP3Q9H4L4 574 aaPredicted RBP30.31■■■□□ 2.44
SMCHD1-207ENST00000581711 PHF23Q9BUL5 403 aaPredicted RBP29.88■■■□□ 2.37
SMCHD1-207ENST00000581711 FOXD1Q16676 465 aa28.27■■■□□ 2.12
SMCHD1-207ENST00000581711 PLPPR3Q6T4P5 718 aa26.72■■□□□ 1.87
SMCHD1-207ENST00000581711 MSH5O43196 834 aa26.52■■□□□ 1.84
SMCHD1-207ENST00000581711 PIAS4Q8N2W9 510 aaPredicted RBP26.38■■□□□ 1.81
SMCHD1-207ENST00000581711 PPP6R1Q9UPN7 881 aa26.3■■□□□ 1.8
SMCHD1-207ENST00000581711 ADRA2BP18089 450 aa26.21■■□□□ 1.79
SMCHD1-207ENST00000581711 POTEDQ86YR6 584 aa26.18■■□□□ 1.78
SMCHD1-207ENST00000581711 MAPK8IP2Q13387 824 aaPredicted RBP24.12■■□□□ 1.45
SMCHD1-207ENST00000581711 DMRT2Q9Y5R5 561 aa24.01■■□□□ 1.43
SMCHD1-207ENST00000581711 SCAF1Q9H7N4 1312 aaKnown RBP23.96■■□□□ 1.43
SMCHD1-207ENST00000581711 PPP4R3CPQ6ZMV5 832 aa23.4■■□□□ 1.34
SMCHD1-207ENST00000581711 HOXD11P31277 338 aaPredicted RBP23.05■■□□□ 1.28
SMCHD1-207ENST00000581711 DCAF8L1A6NGE4 600 aa23.04■■□□□ 1.28
SMCHD1-207ENST00000581711 CNKSR2Q8WXI2 1034 aa22.99■■□□□ 1.27
SMCHD1-207ENST00000581711 CACNB1Q02641 598 aaPredicted RBP22.86■■□□□ 1.25
SMCHD1-207ENST00000581711 RNF216Q9NWF9 866 aaPredicted RBP22.83■■□□□ 1.25
SMCHD1-207ENST00000581711 RNF39Q9H2S5 420 aa22.62■■□□□ 1.21
SMCHD1-207ENST00000581711 NCBP3Q53F19 620 aaKnown RBP22.44■■□□□ 1.18
SMCHD1-207ENST00000581711 DNAJC5BQ9UF47 199 aa22.28■■□□□ 1.16
SMCHD1-207ENST00000581711 C1QBPQ07021 282 aaKnown RBP22.27■■□□□ 1.16
SMCHD1-207ENST00000581711 NPM3O75607 178 aaKnown RBP22.13■■□□□ 1.13
SMCHD1-207ENST00000581711 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.97■■□□□ 1.116e-6■□□□□ 8.3
SMCHD1-207ENST00000581711 KCNA4P22459 653 aa21.56■■□□□ 1.04
SMCHD1-207ENST00000581711 U3KPZ7 1027 aaPredicted RBP21.5■■□□□ 1.03
SMCHD1-207ENST00000581711 SPINK5Q9NQ38 1064 aaPredicted RBP21.24■□□□□ 0.99
SMCHD1-207ENST00000581711 CAPN15O75808 1086 aa21.21■□□□□ 0.99
SMCHD1-207ENST00000581711 SLC4A2P04920 1241 aa21.18■□□□□ 0.98
SMCHD1-207ENST00000581711 DSG3P32926 999 aa21.12■□□□□ 0.97
SMCHD1-207ENST00000581711 APLP2Q06481 763 aa20.86■□□□□ 0.93
SMCHD1-207ENST00000581711 TRHP20396 242 aaPredicted RBP20.82■□□□□ 0.92
SMCHD1-207ENST00000581711 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.81■□□□□ 0.92
SMCHD1-207ENST00000581711 HNRNPUL2Q1KMD3 747 aaKnown RBP20.81■□□□□ 0.92
SMCHD1-207ENST00000581711 ZNF219Q9P2Y4 722 aaPredicted RBP20.78■□□□□ 0.92
SMCHD1-207ENST00000581711 ABCB7O75027 752 aa20.7■□□□□ 0.9
SMCHD1-207ENST00000581711 SAMD1Q6SPF0 538 aaPredicted RBP20.69■□□□□ 0.9
SMCHD1-207ENST00000581711 POTEHQ6S545 545 aa20.48■□□□□ 0.87
SMCHD1-207ENST00000581711 MYCNP04198 464 aaPredicted RBP20.47■□□□□ 0.87
SMCHD1-207ENST00000581711 SLC4A1APQ9BWU0 796 aaKnown RBP20.31■□□□□ 0.84
SMCHD1-207ENST00000581711 POLA2Q14181 598 aa20.23■□□□□ 0.83
SMCHD1-207ENST00000581711 FOXD4L1Q9NU39 408 aa20.17■□□□□ 0.82
SMCHD1-207ENST00000581711 RBM42Q9BTD8 480 aaKnown RBP20.15■□□□□ 0.82
SMCHD1-207ENST00000581711 ATF5Q9Y2D1 282 aaPredicted RBP20.02■□□□□ 0.8
SMCHD1-207ENST00000581711 ZBTB22O15209 634 aa19.83■□□□□ 0.77
SMCHD1-207ENST00000581711 ZBTB12Q9Y330 459 aaPredicted RBP19.8■□□□□ 0.76
SMCHD1-207ENST00000581711 CHRDL2Q6WN34 429 aa19.79■□□□□ 0.76
SMCHD1-207ENST00000581711 AKT1S1Q96B36 256 aa19.65■□□□□ 0.74
SMCHD1-207ENST00000581711 OSCARQ8IYS5 282 aa19.61■□□□□ 0.73
SMCHD1-207ENST00000581711 ATXN8OSP0DMR3 200 aa19.55■□□□□ 0.72
SMCHD1-207ENST00000581711 REM2Q8IYK8 340 aaPredicted RBP19.48■□□□□ 0.71
SMCHD1-207ENST00000581711 PITPNM1O00562 1244 aa19.28■□□□□ 0.68
SMCHD1-207ENST00000581711 PIP4P2Q8N4L2 257 aa19.28■□□□□ 0.68
SMCHD1-207ENST00000581711 FBLN2P98095 1184 aa19.24■□□□□ 0.67
SMCHD1-207ENST00000581711 SPDYE2BA6NHP3 402 aa19.17■□□□□ 0.66
SMCHD1-207ENST00000581711 SPDYE6P0CI01 402 aa19.17■□□□□ 0.66
SMCHD1-207ENST00000581711 SPDYE2Q495Y8 402 aa19.17■□□□□ 0.66
SMCHD1-207ENST00000581711 FXR2P51116 673 aaKnown RBP eCLIP19.13■□□□□ 0.655e-6■■■□□ 14.9
SMCHD1-207ENST00000581711 SP7Q8TDD2 431 aaPredicted RBP19.12■□□□□ 0.65
SMCHD1-207ENST00000581711 MKRN4PQ13434 485 aaPredicted RBP19.09■□□□□ 0.65
SMCHD1-207ENST00000581711 HAX1O00165 279 aa18.97■□□□□ 0.63
SMCHD1-207ENST00000581711 ZNF692Q9BU19 519 aaPredicted RBP18.92■□□□□ 0.62
SMCHD1-207ENST00000581711 SSUH2Q9Y2M2 353 aa18.9■□□□□ 0.62
SMCHD1-207ENST00000581711 SPDYE1Q8NFV5 336 aaPredicted RBP18.88■□□□□ 0.61
SMCHD1-207ENST00000581711 CLEC11AQ9Y240 323 aa18.86■□□□□ 0.61
SMCHD1-207ENST00000581711 PRKAR2AP13861 404 aaKnown RBP18.78■□□□□ 0.6
SMCHD1-207ENST00000581711 CSRNP3Q8WYN3 585 aa18.74■□□□□ 0.59
SMCHD1-207ENST00000581711 EVX2Q03828 476 aa18.73■□□□□ 0.59
SMCHD1-207ENST00000581711 PABPN1Q86U42 306 aaKnown RBP eCLIP18.64■□□□□ 0.57
SMCHD1-207ENST00000581711 C19orf67A6NJJ6 358 aa18.53■□□□□ 0.56
SMCHD1-207ENST00000581711 PRR29P0C7W0 189 aa18.52■□□□□ 0.56
SMCHD1-207ENST00000581711 CHADLQ6NUI6 762 aa18.52■□□□□ 0.56
SMCHD1-207ENST00000581711 EHMT2Q96KQ7 1210 aa18.43■□□□□ 0.54
SMCHD1-207ENST00000581711 GABBR2O75899 941 aa18.29■□□□□ 0.52
SMCHD1-207ENST00000581711 FARP1Q9Y4F1 1045 aaPredicted RBP18.23■□□□□ 0.51
SMCHD1-207ENST00000581711 CD44P16070 742 aaKnown RBP18.17■□□□□ 0.5
SMCHD1-207ENST00000581711 SPDYE4A6NLX3 237 aa18.1■□□□□ 0.49
SMCHD1-207ENST00000581711 STAG3Q9UJ98 1225 aa18.07■□□□□ 0.48
SMCHD1-207ENST00000581711 CREBZFQ9NS37 354 aa18.03■□□□□ 0.48
SMCHD1-207ENST00000581711 CLCN6P51797 869 aa17.93■□□□□ 0.46
SMCHD1-207ENST00000581711 LHX8Q68G74 356 aa17.93■□□□□ 0.46
SMCHD1-207ENST00000581711 POTEIP0CG38 1075 aa17.91■□□□□ 0.46
SMCHD1-207ENST00000581711 ZNF579Q8NAF0 562 aaKnown RBP17.88■□□□□ 0.45
SMCHD1-207ENST00000581711 ZRANB1Q9UGI0 708 aa17.88■□□□□ 0.45
SMCHD1-207ENST00000581711 DCBLD2Q96PD2 775 aa17.77■□□□□ 0.44
SMCHD1-207ENST00000581711 PAK3O75914 559 aaPredicted RBP17.7■□□□□ 0.42
SMCHD1-207ENST00000581711 MNX1P50219 401 aaPredicted RBP17.7■□□□□ 0.42
SMCHD1-207ENST00000581711 GALR2O43603 387 aaPredicted RBP17.68■□□□□ 0.42
SMCHD1-207ENST00000581711 NPM1P06748 294 aaKnown RBP eCLIP17.68■□□□□ 0.42
SMCHD1-207ENST00000581711 PROM2Q8N271 834 aa17.64■□□□□ 0.41
SMCHD1-207ENST00000581711 PHF12Q96QT6 1004 aa17.63■□□□□ 0.41
SMCHD1-207ENST00000581711 MS4A3Q96HJ5 214 aa17.38■□□□□ 0.37
SMCHD1-207ENST00000581711 TSPYL2Q9H2G4 693 aaPredicted RBP17.37■□□□□ 0.37
SMCHD1-207ENST00000581711 PELP1Q8IZL8 1130 aaKnown RBP17.35■□□□□ 0.37
SMCHD1-207ENST00000581711 POTEB2H3BUK9 544 aa17.32■□□□□ 0.36
SMCHD1-207ENST00000581711 CCDC61Q9Y6R9 512 aa17.31■□□□□ 0.36
SMCHD1-207ENST00000581711 ASTLQ6HA08 431 aaPredicted RBP17.3■□□□□ 0.36
SMCHD1-207ENST00000581711 OTUD5Q96G74 571 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms