RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 TRAIPQ9BWF2 469 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 HAPLN2Q9GZV7 340 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 CDT1Q9H211 546 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 PCDHB2Q9Y5E7 798 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 SLC4A7Q9Y6M7 1214 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 ZMYM2Q9UBW7 1377 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 UBE4BO95155 1302 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 CLDN3O15551 220 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 TGFB1I1O43294 461 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 ZNF623O75123 536 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 HARSP12081 509 aaKnown RBP9.37□□□□□ -0.91
NUP88-211ENST00000575976 SKIP12755 728 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 CD44P16070 742 aaKnown RBP9.37□□□□□ -0.91
NUP88-211ENST00000575976 ATF7P17544 494 aaPredicted RBP9.37□□□□□ -0.91
NUP88-211ENST00000575976 ADSSP30520 456 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 PLA2G5P39877 138 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 PRCPP42785 496 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 MATR3P43243 847 aaKnown RBP eCLIP9.37□□□□□ -0.91
NUP88-211ENST00000575976 MCL1Q07820 350 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 SKOR2Q2VWA4 1001 aaPredicted RBP9.37□□□□□ -0.91
NUP88-211ENST00000575976 DCAF4L1Q3SXM0 396 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 SEZ6Q53EL9 994 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 ZNF697Q5TEC3 545 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 MRPL10Q7Z7H8 261 aaKnown RBP9.37□□□□□ -0.91
NUP88-211ENST00000575976 ZNF598Q86UK7 904 aaKnown RBP9.37□□□□□ -0.91
NUP88-211ENST00000575976 NPAS4Q8IUM7 802 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 GUF1Q8N442 669 aaKnown RBP9.37□□□□□ -0.91
NUP88-211ENST00000575976 CEP120Q8N960 986 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 TRIML1Q8N9V2 468 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 SMG8Q8ND04 991 aaKnown RBP9.37□□□□□ -0.91
NUP88-211ENST00000575976 LPPQ93052 612 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 TOP1MTQ969P6 601 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 TRIM6Q9C030 488 aaPredicted RBP9.37□□□□□ -0.91
NUP88-211ENST00000575976 GBP3Q9H0R5 595 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 MTIF3Q9H2K0 278 aaKnown RBP9.37□□□□□ -0.91
NUP88-211ENST00000575976 KCTD10Q9H3F6 313 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 ELAC1Q9H777 363 aaKnown RBP9.37□□□□□ -0.91
NUP88-211ENST00000575976 TMEM161AQ9NX61 479 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 SNTG2Q9NY99 539 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 ANKFY1Q9P2R3 1169 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 RAPGEFL1Q9UHV5 662 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 HES2Q9Y543 173 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 IPPQ9Y573 584 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 PCDHB7Q9Y5E2 793 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 STYXL1Q9Y6J8 313 aa9.37□□□□□ -0.91
NUP88-211ENST00000575976 A0A0B4J269 797 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 MEIS3P2A8K0S8 358 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 PPP1R3GB7ZBB8 358 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 CLIC2O15247 247 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 KIF20AO95235 890 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 EOMESO95936 686 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 STAG3L1P0CL83 205 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 MCF2P10911 925 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 FGFR1P11362 822 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 ITGA4P13612 1032 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 AKAP5P24588 427 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 RAB27AP51159 221 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 NLRP12P59046 1061 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 OSTNP61366 133 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 NOLC1Q14978 699 aaKnown RBP eCLIP9.36□□□□□ -0.91
NUP88-211ENST00000575976 COBLL1Q53SF7 1204 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 SLFN12LQ6IEE8 588 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 FAM117BQ6P1L5 589 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 ARMCX5Q6P1M9 558 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 AGMOQ6ZNB7 445 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 TMEM192Q8IY95 271 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 THNSL1Q8IYQ7 743 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 ADSSL1Q8N142 457 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 CRIPAKQ8N1N5 446 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 RNF169Q8NCN4 708 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 PHOSPHO2Q8TCD6 241 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 POMGNT1Q8WZA1 660 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 SYAP1Q96A49 352 aaPredicted RBP9.36□□□□□ -0.91
NUP88-211ENST00000575976 PGBD4Q96DM1 585 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 SLC9A7Q96T83 725 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 CBWD1Q9BRT8 395 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 MSTO1Q9BUK6 570 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 APOL6Q9BWW8 343 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 GTPBP4Q9BZE4 634 aaKnown RBP9.36□□□□□ -0.91
NUP88-211ENST00000575976 SEMA6BQ9H3T3 888 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 NXF3Q9H4D5 531 aaKnown RBP9.36□□□□□ -0.91
NUP88-211ENST00000575976 PCIF1Q9H4Z3 704 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 AGPAT3Q9NRZ7 376 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 RNF19AQ9NV58 838 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 TYW1Q9NV66 732 aaKnown RBP9.36□□□□□ -0.91
NUP88-211ENST00000575976 LRFN2Q9ULH4 789 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 MICAL3Q7RTP6 2002 aa9.36□□□□□ -0.91
NUP88-211ENST00000575976 GOLGA8IPA6NC78 632 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 GOLGA8JA6NMD2 632 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 GRXCR1A8MXD5 290 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 PDXKO00764 312 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 OGTO15294 1046 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 ATP2A2P16615 1042 aaKnown RBP9.35□□□□□ -0.91
NUP88-211ENST00000575976 GARTP22102 1010 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 PPP1R2P41236 205 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 GRM5P41594 1212 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 GATMP50440 423 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 PMS1P54277 932 aaKnown RBP9.35□□□□□ -0.91
NUP88-211ENST00000575976 SNRPFP62306 86 aaKnown RBP9.35□□□□□ -0.91
NUP88-211ENST00000575976 ZBTB41Q5SVQ8 909 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms