RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	SRSF5	Q13243	272 aa	Known RBP	13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	CSRP2	Q16527	193 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	PRR16	Q569H4	304 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	UBXN11	Q5T124	520 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	ZNF852	Q6ZMS4	543 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	RABGGTA	Q92696	567 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	NLRP4	Q96MN2	994 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	LRRC2	Q9BYS8	371 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	INO80B	Q9C086	356 aa	Predicted RBP	13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	AGPAT5	Q9NUQ2	364 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	SUCLA2	Q9P2R7	463 aa	Predicted RBP	13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	NDRG2	Q9UN36	371 aa	Known RBP	13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	POLI	Q9UNA4	740 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	SLC12A7	Q9Y666	1083 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	IGKV6-21	A0A0C4DH24	114 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	WDR64	B1ANS9	1081 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	C1QTNF9B	B2RNN3	333 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	HR	O43593	1189 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	CHMP2A	O43633	222 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	C1QTNF9	P0C862	333 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	HOXA11	P31270	313 aa	Predicted RBP	13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	DNM2	P50570	870 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	NRL	P54845	237 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	CDC42EP1	Q00587	391 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	SIM2	Q14190	667 aa	Predicted RBP	13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	IL31	Q6EBC2	164 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	PPP1R18	Q6NYC8	613 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	PRSS55	Q6UWB4	352 aa	Predicted RBP	13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	ZNF410	Q86VK4	478 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	MICU3	Q86XE3	530 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	SMC5	Q8IY18	1101 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	ZNF687	Q8N1G0	1237 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	TMTC2	Q8N394	836 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	SMG8	Q8ND04	991 aa	Known RBP	13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	GJA10	Q969M2	543 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	RNF25	Q96BH1	459 aa	Predicted RBP	13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	IFT122	Q9HBG6	1241 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	FNIP2	Q9P278	1114 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	SEPT9	Q9UHD8	586 aa	Predicted RBP	13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	ZMIZ1	Q9ULJ6	1067 aa		13.21	□□□□□ -0.29
CLK3-222	ENST00000568232		V9GY48	417 aa	Predicted RBP	13.21	□□□□□ -0.29
CLK3-222	ENST00000568232	NBEA	Q8NFP9	2946 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	CNTNAP2	Q9UHC6	1331 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	ARL5C	A6NH57	179 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	STBD1	O95210	358 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	C1R	P00736	705 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	NCL	P19338	710 aa	Known RBP	13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	SCNN1G	P51170	649 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	SET	Q01105	290 aa	Predicted RBP	13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	NUCB1	Q02818	461 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	DSC1	Q08554	894 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	USP41	Q3LFD5	358 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	FUT10	Q6P4F1	479 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	ING5	Q8WYH8	240 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	DDX1	Q92499	740 aa	Known RBP	13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	ZFP42	Q96MM3	310 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	MBOAT7	Q96N66	472 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	GAD1	Q99259	594 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	MINDY3	Q9H8M7	445 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	HCFC1R1	Q9NWW0	138 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	BARHL2	Q9NY43	387 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	ZFYVE26	Q68DK2	2539 aa		13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	MYH9	P35579	1960 aa	Known RBP	13.2	□□□□□ -0.3
CLK3-222	ENST00000568232	DOCK6	Q96HP0	2047 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	TM4SF5	O14894	197 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	ITGA4	P13612	1032 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	MCM5	P33992	734 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	MLH1	P40692	756 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	LIFR	P42702	1097 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	SATB1	Q01826	763 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	FUT2	Q10981	343 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	CCDC6	Q16204	474 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	RTP2	Q5QGT7	225 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	PPM1L	Q5SGD2	360 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	NPAS3	Q8IXF0	933 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	MAP4K1	Q92918	833 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	LENG9	Q96B70	501 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	TMEM87B	Q96K49	555 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	MTA3	Q9BTC8	594 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	COLEC11	Q9BWP8	271 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	NIFK	Q9BYG3	293 aa	Known RBP	13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	CHRD	Q9H2X0	955 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	UNC45A	Q9H3U1	944 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	RXFP3	Q9NSD7	469 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	CACNG4	Q9UBN1	327 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	FBXW11	Q9UKB1	542 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	MRPS17	Q9Y2R5	130 aa	Known RBP	13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	HES2	Q9Y543	173 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	LAMA1	P25391	3075 aa		13.19	□□□□□ -0.3
CLK3-222	ENST00000568232	CHURC1-FNTB	B4DL54	471 aa		13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	MSH4	O15457	936 aa		13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	MAF	O75444	373 aa	Predicted RBP	13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	C8A	P07357	584 aa		13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	HNRNPA1	P09651	372 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	GSPT1	P15170	499 aa	Known RBP	13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	FNTB	P49356	437 aa		13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	SF3A2	Q15428	464 aa	Known RBP	13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	AASDH	Q4L235	1098 aa	Predicted RBP	13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms