RNA–Protein interactions for RNA: ENST00000560679.1

TPM1-225, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-225ENST00000560679 USP18Q9UMW8 372 aa11.11□□□□□ -0.63
TPM1-225ENST00000560679 COL4A3BPQ9Y5P4 624 aa11.11□□□□□ -0.63
TPM1-225ENST00000560679 ARID2Q68CP9 1835 aa11.11□□□□□ -0.63
TPM1-225ENST00000560679 ZZEF1O43149 2961 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 KLF18A0A0U1RQI7 1052 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 ARL5CA6NH57 179 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 GAS2O43903 313 aaKnown RBP11.1□□□□□ -0.63
TPM1-225ENST00000560679 C1RP00736 705 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 ADD1P35611 737 aaKnown RBP11.1□□□□□ -0.63
TPM1-225ENST00000560679 DNM2P50570 870 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 EXOSC10Q01780 885 aaKnown RBP11.1□□□□□ -0.63
TPM1-225ENST00000560679 FZD5Q13467 585 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 FUT10Q6P4F1 479 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 MIER3Q7Z3K6 550 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 ZNF579Q8NAF0 562 aaKnown RBP11.1□□□□□ -0.63
TPM1-225ENST00000560679 RDM1Q8NG50 284 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 ITFG1Q8TB96 612 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 FGF13Q92913 245 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 BORCS6Q96GS4 357 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 GAD1Q99259 594 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 KXD1Q9BQD3 176 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 FNIP2Q9P278 1114 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 CACNG4Q9UBN1 327 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 FBXW11Q9UKB1 542 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 HES2Q9Y543 173 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 IPPQ9Y573 584 aa11.1□□□□□ -0.63
TPM1-225ENST00000560679 ZFP37Q9Y6Q3 630 aaPredicted RBP11.1□□□□□ -0.63
TPM1-225ENST00000560679 ATRXP46100 2492 aa11.09□□□□□ -0.63
TPM1-225ENST00000560679 NID2Q14112 1375 aa11.09□□□□□ -0.63
TPM1-225ENST00000560679 MAGEA9P43362 315 aa11.09□□□□□ -0.63
TPM1-225ENST00000560679 PPM1JQ5JR12 505 aa11.09□□□□□ -0.63
TPM1-225ENST00000560679 RTP2Q5QGT7 225 aa11.09□□□□□ -0.63
TPM1-225ENST00000560679 PRSS55Q6UWB4 352 aaPredicted RBP11.09□□□□□ -0.63
TPM1-225ENST00000560679 TPRG1Q6ZUI0 275 aa11.09□□□□□ -0.63
TPM1-225ENST00000560679 MTSS1LQ765P7 747 aa11.09□□□□□ -0.63
TPM1-225ENST00000560679 GSTCDQ8NEC7 633 aa11.09□□□□□ -0.63
TPM1-225ENST00000560679 SECISBP2LQ93073 1101 aaKnown RBP11.09□□□□□ -0.63
TPM1-225ENST00000560679 C6orf50Q9HD87 102 aa11.09□□□□□ -0.63
TPM1-225ENST00000560679 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.09□□□□□ -0.63
TPM1-225ENST00000560679 WRAP73Q9P2S5 460 aaPredicted RBP11.09□□□□□ -0.63
TPM1-225ENST00000560679 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.09□□□□□ -0.63
TPM1-225ENST00000560679 VWA8A3KMH1 1905 aa11.09□□□□□ -0.63
TPM1-225ENST00000560679 WDFY3Q8IZQ1 3526 aa11.09□□□□□ -0.63
TPM1-225ENST00000560679 FAM208BQ5VWN6 2430 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 DDX11L8A8MPP1 907 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 TBC1D4O60343 1298 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 TSPAN1O60635 241 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 TDP2O95551 362 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 ITGA4P13612 1032 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 RPS9P46781 194 aaKnown RBP11.08□□□□□ -0.64
TPM1-225ENST00000560679 RCAN1P53805 252 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 NPEPPSP55786 919 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 SPEM2Q0P670 501 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 LAMTOR4Q0VGL1 99 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 MTAPQ13126 283 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 LPAL2Q16609 132 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 USP41Q3LFD5 358 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 ADCK5Q3MIX3 580 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 POTEHQ6S545 545 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 RSPO2Q6UXX9 243 aaPredicted RBP11.08□□□□□ -0.64
TPM1-225ENST00000560679 SRGAP1Q7Z6B7 1085 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 NPAS3Q8IXF0 933 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 GPR65Q8IYL9 337 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 ZNF687Q8N1G0 1237 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 ETNPPLQ8TBG4 499 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 PRPF31Q8WWY3 499 aaKnown RBP11.08□□□□□ -0.64
TPM1-225ENST00000560679 RABGGTAQ92696 567 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 TMEM143Q96AN5 459 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 CLSTN3Q9BQT9 956 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 ESYT1Q9BSJ8 1104 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 NXF3Q9H4D5 531 aaKnown RBP11.08□□□□□ -0.64
TPM1-225ENST00000560679 UBN1Q9NPG3 1134 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 BMP2KQ9NSY1 1161 aaPredicted RBP11.08□□□□□ -0.64
TPM1-225ENST00000560679 ADAM28Q9UKQ2 775 aa11.08□□□□□ -0.64
TPM1-225ENST00000560679 EML1O00423 815 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 SLC30A4O14863 429 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 CCL16O15467 120 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 ADAM12O43184 909 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 C8AP07357 584 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 SRGAP2CP0DJJ0 459 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 GNA11P29992 359 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 HOXA9P31269 272 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 USP11P51784 963 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 PFKPQ01813 784 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 AMHR2Q16671 573 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 Q4G0T1 1027 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 ZBTB41Q5SVQ8 909 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 CNNM3Q8NE01 707 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 NETO1Q8TDF5 533 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 CCDC12Q8WUD4 166 aaPredicted RBP11.07□□□□□ -0.64
TPM1-225ENST00000560679 PSPC1Q8WXF1 523 aaKnown RBP11.07□□□□□ -0.64
TPM1-225ENST00000560679 CPB2Q96IY4 423 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 PAAF1Q9BRP4 392 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 PHF20Q9BVI0 1012 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 DHX33Q9H6R0 707 aaKnown RBP11.07□□□□□ -0.64
TPM1-225ENST00000560679 ANO2Q9NQ90 1003 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 HEBP1Q9NRV9 189 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 HCFC1R1Q9NWW0 138 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 VPS54Q9P1Q0 977 aa11.07□□□□□ -0.64
TPM1-225ENST00000560679 GMEB2Q9UKD1 530 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms