RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 TRMT10CQ7L0Y3 403 aaKnown RBP5.3□□□□□ -1.56
SYNE2-223ENST00000557005 TRIM50Q86XT4 487 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 AFAP1L2Q8N4X5 818 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 SPDYE1Q8NFV5 336 aaPredicted RBP5.3□□□□□ -1.56
SYNE2-223ENST00000557005 DCAF4Q8WV16 495 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 CCT6BQ92526 530 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 ANKS1AQ92625 1134 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 POP1Q99575 1024 aaKnown RBP5.3□□□□□ -1.56
SYNE2-223ENST00000557005 FAM213AQ9BRX8 229 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 MED10Q9BTT4 135 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 TRPV6Q9H1D0 765 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 THEGQ9P2T0 379 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 RIC1Q4ADV7 1423 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 A0A087X0T9 212 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 SMIM22K7EJ46 135 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 RIPK2O43353 540 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 TRAPPC3O43617 180 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 FAM228BP0C875 321 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 PRLRP16471 622 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 FMO5P49326 533 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 DSG1Q02413 1049 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 MTM1Q13496 603 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 KLHL38Q2WGJ6 581 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 TRIM42Q8IWZ5 723 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 ICA1LQ8NDH6 482 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 AGR3Q8TD06 166 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 MORC4Q8TE76 937 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 SLC20A1Q8WUM9 679 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 CNBD2Q96M20 576 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 TTC25Q96NG3 672 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 MXD3Q9BW11 206 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 TSSK1BQ9BXA7 367 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 STK33Q9BYT3 514 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 ZFATQ9P243 1243 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 CLRN2A0PK11 232 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 EPHB6O15197 1021 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 MCF2P10911 925 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 CCND2P30279 289 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 PBX1P40424 430 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 SERPINB4P48594 390 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 ALDH5A1P51649 535 aaPredicted RBP5.3□□□□□ -1.56
SYNE2-223ENST00000557005 STAT2P52630 851 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 PCGF5Q86SE9 256 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 PRPF39Q86UA1 669 aaKnown RBP5.3□□□□□ -1.56
SYNE2-223ENST00000557005 NLRX1Q86UT6 975 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 RHPN2Q8IUC4 686 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 DAGLBQ8NCG7 672 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 TBC1D22AQ8WUA7 517 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 SGSM3Q96HU1 749 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 CALR3Q96L12 384 aaKnown RBP5.3□□□□□ -1.56
SYNE2-223ENST00000557005 ADPGKQ9BRR6 497 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 CALN1Q9BXU9 219 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 MRPL46Q9H2W6 279 aaKnown RBP5.3□□□□□ -1.56
SYNE2-223ENST00000557005 DBNDD1Q9H9R9 158 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 BATF3Q9NR55 127 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 LEMD3Q9Y2U8 911 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 AKR1B1P15121 316 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 HOXA7P31268 230 aaPredicted RBP5.29□□□□□ -1.56
SYNE2-223ENST00000557005 RPL21P46778 160 aaKnown RBP5.29□□□□□ -1.56
SYNE2-223ENST00000557005 FXR2P51116 673 aaKnown RBP eCLIP5.29□□□□□ -1.566e-13■■■■■ 52.1
SYNE2-223ENST00000557005 ZNF394Q53GI3 561 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 GPATCH4Q5T3I0 446 aaKnown RBP5.29□□□□□ -1.56
SYNE2-223ENST00000557005 C12orf60Q5U649 245 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 PADI6Q6TGC4 694 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 TMEM270Q6UE05 265 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 SH3RF1Q7Z6J0 888 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 SESTD1Q86VW0 696 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 TEKT4Q8WW24 435 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 MARCOQ9UEW3 520 aaPredicted RBP5.29□□□□□ -1.56
SYNE2-223ENST00000557005 XPO7Q9UIA9 1087 aaKnown RBP5.29□□□□□ -1.56
SYNE2-223ENST00000557005 ARFGEF2Q9Y6D5 1785 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 ATXN2Q99700 1313 aaKnown RBP5.29□□□□□ -1.56
SYNE2-223ENST00000557005 FAM47DPA6NHR8 397 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 RSPH10B2B2RC85 870 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 RSPH10BP0C881 870 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 SEC23AQ15436 765 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 KYNUQ16719 465 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 EPC2Q52LR7 807 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 C16orf87Q6PH81 154 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 FBXL16Q8N461 479 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 DCLK2Q8N568 766 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 MIEF2Q96C03 454 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 GRAMD1AQ96CP6 724 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 C9orf72Q96LT7 481 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 OLFM3Q96PB7 478 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 MANSC1Q9H8J5 431 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 MRPL47Q9HD33 250 aaKnown RBP5.29□□□□□ -1.56
SYNE2-223ENST00000557005 C15orf41Q9Y2V0 281 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 A6NJR5 290 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 TMEM253P0C7T8 217 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 MARK3P27448 753 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 GNA15P30679 374 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 VHLP40337 213 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 YWHAEP62258 255 aaKnown RBP5.29□□□□□ -1.56
SYNE2-223ENST00000557005 PDE1BQ01064 536 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 IL1RL1Q01638 556 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 DNAJC3Q13217 504 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 MEA1Q16626 185 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 PDZD8Q8NEN9 1154 aa5.29□□□□□ -1.56
SYNE2-223ENST00000557005 TTC8Q8TAM2 541 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms