RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 SAMD9LQ8IVG5 1584 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 LRRIQ1Q96JM4 1722 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 PLEKHG3A1L390 1219 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 CCT8L1PA6NM43 557 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 EPC1Q9H2F5 836 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 FBXL5Q9UKA1 691 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 PCCAP05165 728 aaPredicted RBP20.43■□□□□ 0.86
HDAC4-215ENST00000543185 FAM167AQ96KS9 214 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 FRMD8Q9BZ67 464 aaPredicted RBP20.43■□□□□ 0.86
HDAC4-215ENST00000543185 WASHC5Q12768 1159 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 ZNF699Q32M78 642 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 XXYLT1Q8NBI6 393 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 FANCEQ9HB96 536 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 FASTKD1Q53R41 847 aaKnown RBP20.43■□□□□ 0.86
HDAC4-215ENST00000543185 SEC16BQ96JE7 1060 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 DHX36Q9H2U1 1008 aaKnown RBP20.43■□□□□ 0.86
HDAC4-215ENST00000543185 MICAL3Q7RTP6 2002 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 ZNF667Q5HYK9 610 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 ATL2Q8NHH9 583 aa20.43■□□□□ 0.86
HDAC4-215ENST00000543185 MMTAG2Q9BU76 263 aaKnown RBP20.43■□□□□ 0.86
HDAC4-215ENST00000543185 KDSRQ06136 332 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 OLFM1Q99784 485 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 ADCY10Q96PN6 1610 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 CASZ1Q86V15 1759 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 XDHP47989 1333 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 AP3M2P53677 418 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 NSUN2Q08J23 767 aaKnown RBP eCLIP20.42■□□□□ 0.86
HDAC4-215ENST00000543185 MTA3Q9BTC8 594 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 LONP2Q86WA8 852 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 C5orf58C9J3I9 102 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 FBXW4P57775 412 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 TBC1D19Q8N5T2 526 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 CEP152O94986 1710 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 TRIP4Q15650 581 aaPredicted RBP20.42■□□□□ 0.86
HDAC4-215ENST00000543185 NIPSNAP3AQ9UFN0 247 aaPredicted RBP20.42■□□□□ 0.86
HDAC4-215ENST00000543185 ITIH6Q6UXX5 1313 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 SH3GL1Q99961 368 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 SAMD9Q5K651 1589 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 PDE8BO95263 885 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 RECQLP46063 649 aaPredicted RBP20.42■□□□□ 0.86
HDAC4-215ENST00000543185 EIF4A1P60842 406 aaKnown RBP20.42■□□□□ 0.86
HDAC4-215ENST00000543185 GFPT1Q06210 699 aaPredicted RBP20.42■□□□□ 0.86
HDAC4-215ENST00000543185 STX3Q13277 289 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 SFMBT1Q9UHJ3 866 aa20.42■□□□□ 0.86
HDAC4-215ENST00000543185 K7ERI5 159 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 LBRQ14739 615 aaKnown RBP20.41■□□□□ 0.86
HDAC4-215ENST00000543185 ANKS3Q6ZW76 656 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 KRT27Q7Z3Y8 459 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 STAG2Q8N3U4 1231 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 TEKT4Q8WW24 435 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 TUBGCP4Q9UGJ1 667 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 MAD2L2Q9UI95 211 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 APOL1O14791 398 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 ALDH18A1P54886 795 aaKnown RBP20.41■□□□□ 0.86
HDAC4-215ENST00000543185 CATSPER2Q96P56 530 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 G3BP2Q9UN86 482 aaKnown RBP20.41■□□□□ 0.86
HDAC4-215ENST00000543185 TK2O00142 265 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 NFIBO00712 420 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 DLGAP3O95886 979 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 TTC33Q6PID6 262 aaPredicted RBP20.41■□□□□ 0.86
HDAC4-215ENST00000543185 HNRNPLLQ8WVV9 542 aaKnown RBP20.41■□□□□ 0.86
HDAC4-215ENST00000543185 NPHS2Q9NP85 383 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 M0R2C6 588 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 ENO1P06733 434 aaKnown RBP20.41■□□□□ 0.86
HDAC4-215ENST00000543185 KCTD2Q14681 263 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 RNF219Q5W0B1 726 aaPredicted RBP20.41■□□□□ 0.86
HDAC4-215ENST00000543185 PPM1NQ8N819 430 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 GYS2P54840 703 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 RNPC3Q96LT9 517 aaKnown RBP20.41■□□□□ 0.86
HDAC4-215ENST00000543185 SDC4P31431 198 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 FAM83BQ5T0W9 1011 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 ASXL2Q76L83 1435 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 MFN1Q8IWA4 741 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 ATP10BO94823 1461 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 H0YC42 278 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 ZFRQ96KR1 1074 aaKnown RBP20.41■□□□□ 0.86
HDAC4-215ENST00000543185 FAM192AQ9GZU8 254 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 SYTL2Q9HCH5 934 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 ADGRG1Q9Y653 693 aa20.41■□□□□ 0.86
HDAC4-215ENST00000543185 PTPRKQ15262 1439 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 SRGAP2O75044 1071 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 PASD1Q8IV76 773 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 TOPORSQ9NS56 1045 aaPredicted RBP20.4■□□□□ 0.86
HDAC4-215ENST00000543185 ADAM30Q9UKF2 790 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 MYH1P12882 1939 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 MYH2Q9UKX2 1941 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 MYH4Q9Y623 1939 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 PSMD3O43242 534 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 SNX12Q9UMY4 172 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 ATP1A3P13637 1013 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 OSBPP22059 807 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 NUP62P37198 522 aaPredicted RBP20.4■□□□□ 0.86
HDAC4-215ENST00000543185 LVRNQ6Q4G3 990 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 KANSL1LA0AUZ9 987 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 PHF2O75151 1096 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 SIKE1Q9BRV8 207 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 TCF3P15923 654 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 OR6B2Q6IFH4 312 aa20.4■□□□□ 0.86
HDAC4-215ENST00000543185 DHX40Q8IX18 779 aaKnown RBP20.4■□□□□ 0.86
HDAC4-215ENST00000543185 BBS7Q8IWZ6 715 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms