RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 HSPBAP1Q96EW2 488 aa4.38□□□□□ -1.71
CSMD3-210ENST00000534172 MS4A5Q9H3V2 200 aa4.38□□□□□ -1.71
CSMD3-210ENST00000534172 GREM2Q9H772 168 aa4.38□□□□□ -1.71
CSMD3-210ENST00000534172 RAPGEFL1Q9UHV5 662 aa4.38□□□□□ -1.71
CSMD3-210ENST00000534172 RCAN3Q9UKA8 241 aa4.38□□□□□ -1.71
CSMD3-210ENST00000534172 CDC42EP3Q9UKI2 254 aa4.38□□□□□ -1.71
CSMD3-210ENST00000534172 PCDHGA9Q9Y5G4 932 aaKnown RBP4.38□□□□□ -1.71
CSMD3-210ENST00000534172 PCDHGA8Q9Y5G5 932 aa4.38□□□□□ -1.71
CSMD3-210ENST00000534172 PCDHGA7Q9Y5G6 932 aa4.38□□□□□ -1.71
CSMD3-210ENST00000534172 PCDHGA6Q9Y5G7 932 aa4.38□□□□□ -1.71
CSMD3-210ENST00000534172 PCDHGA3Q9Y5H0 932 aa4.38□□□□□ -1.71
CSMD3-210ENST00000534172 PCDHGA2Q9Y5H1 932 aa4.38□□□□□ -1.71
CSMD3-210ENST00000534172 A0A1B0GTL3 188 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 CCDC189A1A4V9 331 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 RPLP2P05387 115 aaKnown RBP4.37□□□□□ -1.71
CSMD3-210ENST00000534172 MORC3Q14149 939 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 ARHGAP29Q52LW3 1261 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 RABGGTAQ92696 567 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 CSRNP2Q9H175 543 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 RGS17Q9UGC6 210 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-210ENST00000534172 DDX20Q9UHI6 824 aaKnown RBP4.37□□□□□ -1.71
CSMD3-210ENST00000534172 DPP7Q9UHL4 492 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 NR2E1Q9Y466 385 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 EPRSP07814 1512 aaKnown RBP4.37□□□□□ -1.71
CSMD3-210ENST00000534172 HMGB1P1B2RPK0 211 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-210ENST00000534172 FOSP01100 380 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-210ENST00000534172 GASTP01350 101 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 LPLP06858 475 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 VSIG10L2P0DP72 767 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 AKAP5P24588 427 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 EPHB4P54760 987 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 ADKP55263 362 aaKnown RBP4.37□□□□□ -1.71
CSMD3-210ENST00000534172 ANTXR2P58335 489 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 SETQ01105 290 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-210ENST00000534172 ACAP2Q15057 778 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 PPP4R3AQ6IN85 833 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 SPICE1Q8N0Z3 855 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 BCL6BQ8N143 479 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-210ENST00000534172 AIFM3Q96NN9 605 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 MAF1Q9H063 256 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 ZCCHC4Q9H5U6 513 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 PUF60Q9UHX1 559 aaKnown RBP4.37□□□□□ -1.71
CSMD3-210ENST00000534172 DNAI1Q9UI46 699 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 RPTORQ8N122 1335 aa4.37□□□□□ -1.71
CSMD3-210ENST00000534172 NUP160Q12769 1436 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 GRIN2BQ13224 1484 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 A0A1W2PR48 441 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 LCHNA4D1U4 455 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 APAF1O14727 1248 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 ERC2O15083 957 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 XPOTO43592 962 aaKnown RBP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 IL33O95760 270 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 RPS19P39019 145 aaKnown RBP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 RAC3P60763 192 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 SRSF2Q01130 221 aaKnown RBP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 GALEQ14376 348 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 ZRSR2Q15696 482 aaKnown RBP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 VMACQ2NL98 169 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 COBLL1Q53SF7 1204 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 SLFN13Q68D06 897 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 PDZD4Q76G19 769 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 ADGRG2Q8IZP9 1017 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 KCNC2Q96PR1 638 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 FAM184BQ9ULE4 1060 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 EDARQ9UNE0 448 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 FAM50BQ9Y247 325 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 DAAM1Q9Y4D1 1078 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 FRMPD2Q68DX3 1309 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 PLB1Q6P1J6 1458 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 A0A0A6YYK5 440 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 GAAP10253 952 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 KIR2DL3P43628 341 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 STAT5BP51692 787 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 MGAT5Q09328 741 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 FOXD4Q12950 439 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 TRIM25Q14258 630 aaKnown RBP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 SAFBQ15424 915 aaKnown RBP eCLIP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 LYSMD2Q8IV50 215 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 TMTC2Q8N394 836 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 GPR156Q8NFN8 814 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 TGFBRAP1Q8WUH2 860 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 TEPSINQ96N21 525 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 SOX7Q9BT81 388 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 PTPRHQ9HD43 1115 aa4.36□□□□□ -1.71
CSMD3-210ENST00000534172 RBM12Q9NTZ6 932 aaKnown RBP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 CNOT11Q9UKZ1 510 aaKnown RBP4.36□□□□□ -1.71
CSMD3-210ENST00000534172 TRIM13O60858 407 aa4.35□□□□□ -1.71
CSMD3-210ENST00000534172 ENDOD1O94919 500 aa4.35□□□□□ -1.71
CSMD3-210ENST00000534172 ZRANB2O95218 330 aaKnown RBP eCLIP4.35□□□□□ -1.71
CSMD3-210ENST00000534172 LY86O95711 162 aa4.35□□□□□ -1.71
CSMD3-210ENST00000534172 PHKG2P15735 406 aa4.35□□□□□ -1.71
CSMD3-210ENST00000534172 BMP7P18075 431 aa4.35□□□□□ -1.71
CSMD3-210ENST00000534172 MALLQ13021 153 aa4.35□□□□□ -1.71
CSMD3-210ENST00000534172 ADRM1Q16186 407 aa4.35□□□□□ -1.71
CSMD3-210ENST00000534172 KRT40Q6A162 431 aa4.35□□□□□ -1.71
CSMD3-210ENST00000534172 LARP4Q71RC2 724 aaKnown RBP eCLIP4.35□□□□□ -1.71
CSMD3-210ENST00000534172 GAREM2Q75VX8 874 aa4.35□□□□□ -1.71
CSMD3-210ENST00000534172 SNX33Q8WV41 574 aa4.35□□□□□ -1.71
CSMD3-210ENST00000534172 NAP1L5Q96NT1 182 aaPredicted RBP4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms