RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 TLR9Q9NR96 1032 aa3.63□□□□□ -1.83
CHMP4A-208ENST00000534106 TRMT13Q9NUP7 481 aaKnown RBP3.63□□□□□ -1.83
CHMP4A-208ENST00000534106 FBXO28Q9NVF7 368 aa3.63□□□□□ -1.83
CHMP4A-208ENST00000534106 HOXC10Q9NYD6 342 aa3.63□□□□□ -1.83
CHMP4A-208ENST00000534106 PARP2Q9UGN5 583 aa3.63□□□□□ -1.83
CHMP4A-208ENST00000534106 FAM184BQ9ULE4 1060 aa3.63□□□□□ -1.83
CHMP4A-208ENST00000534106 RIPK3Q9Y572 518 aa3.63□□□□□ -1.83
CHMP4A-208ENST00000534106 CACNA1HO95180 2353 aa3.63□□□□□ -1.83
CHMP4A-208ENST00000534106 DMXL1Q9Y485 3027 aa3.63□□□□□ -1.83
CHMP4A-208ENST00000534106 ASTN1O14525 1302 aa3.63□□□□□ -1.83
CHMP4A-208ENST00000534106 KIF16BQ96L93 1317 aa3.63□□□□□ -1.83
CHMP4A-208ENST00000534106 FANCIQ9NVI1 1328 aa3.63□□□□□ -1.83
CHMP4A-208ENST00000534106 TPRP12270 2363 aaKnown RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 AK9Q5TCS8 1911 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 ZC3H12DA2A288 527 aaKnown RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 FAM221AA4D161 298 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 NOTOA8MTQ0 251 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 RGS13O14921 159 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 DUSP11O75319 330 aaKnown RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 FLOT1O75955 427 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 LDHCP07864 332 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 CYP2D6P10635 497 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 SHMT1P34896 483 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 ST13P50502 369 aaKnown RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 PLCD1P51178 756 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 VCPP55072 806 aaKnown RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 NCKAP1LP55160 1127 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 GJA9P57773 515 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 GSTO1P78417 241 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 CYP4F8P98187 520 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 DDX10Q13206 875 aaKnown RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 LAPTM5Q13571 262 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 PWP1Q13610 501 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 ITGA7Q13683 1181 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 MPP2Q14168 576 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 KCTD2Q14681 263 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 ABCB5Q2M3G0 1257 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 CCDC144BQ3MJ40 725 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 CERKLQ49MI3 558 aaPredicted RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 HSF5Q4G112 596 aaPredicted RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 ARSHQ5FYA8 562 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 TATDN1Q6P1N9 297 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 NOL8Q76FK4 1167 aaKnown RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 TMEFF1Q8IYR6 380 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 RPUSD2Q8IZ73 545 aaKnown RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 MIGA1Q8NAN2 632 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 SLC43A3Q8NBI5 491 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 GOLM1Q8NBJ4 401 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 SHCBP1Q8NEM2 672 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 NUP43Q8NFH3 380 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 ATOH1Q92858 354 aaPredicted RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 FCRL2Q96LA5 508 aaPredicted RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 PLCD4Q9BRC7 762 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 BDH2Q9BUT1 245 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 CDADC1Q9BWV3 514 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 FTOQ9C0B1 505 aaKnown RBP eCLIP3.62□□□□□ -1.831e-12■■■■□ 25.8
CHMP4A-208ENST00000534106 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 DHX36Q9H2U1 1008 aaKnown RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 MROH8Q9H579 483 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 PIH1D3Q9NQM4 214 aaKnown RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 PDGFCQ9NRA1 345 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 SLC5A4Q9NY91 659 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 LRP2BPQ9P2M1 347 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 TNFRSF10DQ9UBN6 386 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 FBXL21Q9UKT6 434 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 CNPY2Q9Y2B0 182 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 GPR55Q9Y2T6 319 aaPredicted RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 POLR3KQ9Y2Y1 108 aaPredicted RBP3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 ELP1O95163 1332 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 FLT1P17948 1338 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 PLXNA1Q9UIW2 1896 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 RLFQ13129 1914 aa3.62□□□□□ -1.83
CHMP4A-208ENST00000534106 BAHCC1Q9P281 2608 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 MAST2Q6P0Q8 1798 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 ANKRD11Q6UB99 2663 aaPredicted RBP3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 PHIPQ8WWQ0 1821 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 ATRXP46100 2492 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 A0A1B0GUL7 405 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 A0A1W2PQJ5 194 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 ANKRD33BA6NCL7 494 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 TMEM221A6NGB7 291 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 M0R296 226 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 MPHOSPH10O00566 681 aaKnown RBP3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 TLR3O15455 904 aaKnown RBP3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 CSPG5O95196 566 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 PRAMEF1O95521 474 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 PDGFBP01127 241 aaPredicted RBP3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 PRKCAP17252 672 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 GTF2F1P35269 517 aaKnown RBP eCLIP3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 LTBRP36941 435 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 STAT3P40763 770 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 MCAMP43121 646 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 KCNC1P48547 511 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 USP14P54578 494 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 ERVFRD-1P60508 538 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 YBX1P67809 324 aaKnown RBP3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 DEFB103AP81534 67 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 CNTN2Q02246 1040 aa3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 DLX2Q07687 328 aaPredicted RBP3.61□□□□□ -1.83
CHMP4A-208ENST00000534106 SNW1Q13573 536 aaKnown RBP3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms