RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 AEBP2Q6ZN18 517 aaPredicted RBP15.01□□□□□ -0.01
CHMP4A-208ENST00000534106 CHIC1Q5VXU3 224 aa14.27□□□□□ -0.13
CHMP4A-208ENST00000534106 SENP3Q9H4L4 574 aaPredicted RBP12.88□□□□□ -0.35
CHMP4A-208ENST00000534106 PHF23Q9BUL5 403 aaPredicted RBP12.71□□□□□ -0.37
CHMP4A-208ENST00000534106 FOXD1Q16676 465 aa11.98□□□□□ -0.49
CHMP4A-208ENST00000534106 PLPPR3Q6T4P5 718 aa11.43□□□□□ -0.58
CHMP4A-208ENST00000534106 MSH5O43196 834 aa11.26□□□□□ -0.61
CHMP4A-208ENST00000534106 PIAS4Q8N2W9 510 aaPredicted RBP11.25□□□□□ -0.61
CHMP4A-208ENST00000534106 ADRA2BP18089 450 aa11.17□□□□□ -0.62
CHMP4A-208ENST00000534106 PPP6R1Q9UPN7 881 aa11.16□□□□□ -0.62
CHMP4A-208ENST00000534106 POTEDQ86YR6 584 aa11.01□□□□□ -0.65
CHMP4A-208ENST00000534106 SCAF1Q9H7N4 1312 aaKnown RBP10.28□□□□□ -0.76
CHMP4A-208ENST00000534106 MAPK8IP2Q13387 824 aaPredicted RBP10.26□□□□□ -0.77
CHMP4A-208ENST00000534106 DMRT2Q9Y5R5 561 aa10.17□□□□□ -0.78
CHMP4A-208ENST00000534106 PPP4R3CPQ6ZMV5 832 aa10.02□□□□□ -0.81
CHMP4A-208ENST00000534106 DCAF8L1A6NGE4 600 aa9.91□□□□□ -0.82
CHMP4A-208ENST00000534106 CNKSR2Q8WXI2 1034 aa9.83□□□□□ -0.84
CHMP4A-208ENST00000534106 HOXD11P31277 338 aaPredicted RBP9.77□□□□□ -0.85
CHMP4A-208ENST00000534106 CACNB1Q02641 598 aaPredicted RBP9.73□□□□□ -0.85
CHMP4A-208ENST00000534106 RNF216Q9NWF9 866 aaPredicted RBP9.73□□□□□ -0.85
CHMP4A-208ENST00000534106 NCBP3Q53F19 620 aaKnown RBP9.66□□□□□ -0.86
CHMP4A-208ENST00000534106 RNF39Q9H2S5 420 aa9.55□□□□□ -0.88
CHMP4A-208ENST00000534106 NPM3O75607 178 aaKnown RBP9.46□□□□□ -0.9
CHMP4A-208ENST00000534106 C1QBPQ07021 282 aaKnown RBP9.45□□□□□ -0.9
CHMP4A-208ENST00000534106 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.43□□□□□ -0.95e-9■■■■□ 24.1
CHMP4A-208ENST00000534106 DNAJC5BQ9UF47 199 aa9.41□□□□□ -0.9
CHMP4A-208ENST00000534106 KCNA4P22459 653 aa9.26□□□□□ -0.93
CHMP4A-208ENST00000534106 U3KPZ7 1027 aaPredicted RBP9.14□□□□□ -0.95
CHMP4A-208ENST00000534106 CAPN15O75808 1086 aa9.1□□□□□ -0.95
CHMP4A-208ENST00000534106 SPINK5Q9NQ38 1064 aaPredicted RBP9.03□□□□□ -0.96
CHMP4A-208ENST00000534106 SLC4A2P04920 1241 aa9□□□□□ -0.97
CHMP4A-208ENST00000534106 APLP2Q06481 763 aa8.98□□□□□ -0.97
CHMP4A-208ENST00000534106 DSG3P32926 999 aa8.96□□□□□ -0.98
CHMP4A-208ENST00000534106 TRHP20396 242 aaPredicted RBP8.95□□□□□ -0.98
CHMP4A-208ENST00000534106 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.94□□□□□ -0.98
CHMP4A-208ENST00000534106 HNRNPUL2Q1KMD3 747 aaKnown RBP8.94□□□□□ -0.98
CHMP4A-208ENST00000534106 ZNF219Q9P2Y4 722 aaPredicted RBP8.89□□□□□ -0.99
CHMP4A-208ENST00000534106 ABCB7O75027 752 aa8.86□□□□□ -0.99
CHMP4A-208ENST00000534106 SAMD1Q6SPF0 538 aaPredicted RBP8.86□□□□□ -0.99
CHMP4A-208ENST00000534106 MYCNP04198 464 aaPredicted RBP8.78□□□□□ -1
CHMP4A-208ENST00000534106 SLC4A1APQ9BWU0 796 aaKnown RBP8.77□□□□□ -1.01
CHMP4A-208ENST00000534106 FOXD4L1Q9NU39 408 aa8.67□□□□□ -1.02
CHMP4A-208ENST00000534106 POLA2Q14181 598 aa8.66□□□□□ -1.02
CHMP4A-208ENST00000534106 POTEHQ6S545 545 aa8.65□□□□□ -1.02
CHMP4A-208ENST00000534106 RBM42Q9BTD8 480 aaKnown RBP8.61□□□□□ -1.03
CHMP4A-208ENST00000534106 ATF5Q9Y2D1 282 aaPredicted RBP8.53□□□□□ -1.04
CHMP4A-208ENST00000534106 ZBTB12Q9Y330 459 aaPredicted RBP8.48□□□□□ -1.05
CHMP4A-208ENST00000534106 ZBTB22O15209 634 aa8.46□□□□□ -1.06
CHMP4A-208ENST00000534106 CHRDL2Q6WN34 429 aa8.4□□□□□ -1.06
CHMP4A-208ENST00000534106 ATXN8OSP0DMR3 200 aa8.37□□□□□ -1.07
CHMP4A-208ENST00000534106 AKT1S1Q96B36 256 aa8.37□□□□□ -1.07
CHMP4A-208ENST00000534106 OSCARQ8IYS5 282 aa8.36□□□□□ -1.07
CHMP4A-208ENST00000534106 FBLN2P98095 1184 aa8.3□□□□□ -1.08
CHMP4A-208ENST00000534106 REM2Q8IYK8 340 aaPredicted RBP8.29□□□□□ -1.08
CHMP4A-208ENST00000534106 SPDYE2BA6NHP3 402 aa8.2□□□□□ -1.1
CHMP4A-208ENST00000534106 SPDYE6P0CI01 402 aa8.2□□□□□ -1.1
CHMP4A-208ENST00000534106 SPDYE2Q495Y8 402 aa8.2□□□□□ -1.1
CHMP4A-208ENST00000534106 PITPNM1O00562 1244 aa8.19□□□□□ -1.1
CHMP4A-208ENST00000534106 PIP4P2Q8N4L2 257 aa8.18□□□□□ -1.1
CHMP4A-208ENST00000534106 ZNF692Q9BU19 519 aaPredicted RBP8.14□□□□□ -1.11
CHMP4A-208ENST00000534106 CLEC11AQ9Y240 323 aa8.14□□□□□ -1.11
CHMP4A-208ENST00000534106 HAX1O00165 279 aa8.12□□□□□ -1.11
CHMP4A-208ENST00000534106 MKRN4PQ13434 485 aaPredicted RBP8.12□□□□□ -1.11
CHMP4A-208ENST00000534106 FXR2P51116 673 aaKnown RBP eCLIP8.1□□□□□ -1.112e-8■■□□□ 13.1
CHMP4A-208ENST00000534106 SPDYE1Q8NFV5 336 aaPredicted RBP8.09□□□□□ -1.11
CHMP4A-208ENST00000534106 SP7Q8TDD2 431 aaPredicted RBP8.09□□□□□ -1.11
CHMP4A-208ENST00000534106 CSRNP3Q8WYN3 585 aa8.08□□□□□ -1.12
CHMP4A-208ENST00000534106 EHMT2Q96KQ7 1210 aa8.05□□□□□ -1.12
CHMP4A-208ENST00000534106 PRKAR2AP13861 404 aaKnown RBP8.03□□□□□ -1.12
CHMP4A-208ENST00000534106 SSUH2Q9Y2M2 353 aa8.03□□□□□ -1.12
CHMP4A-208ENST00000534106 PABPN1Q86U42 306 aaKnown RBP eCLIP8□□□□□ -1.13
CHMP4A-208ENST00000534106 PRR29P0C7W0 189 aa7.97□□□□□ -1.13
CHMP4A-208ENST00000534106 CHADLQ6NUI6 762 aa7.93□□□□□ -1.14
CHMP4A-208ENST00000534106 EVX2Q03828 476 aa7.91□□□□□ -1.14
CHMP4A-208ENST00000534106 C19orf67A6NJJ6 358 aa7.85□□□□□ -1.15
CHMP4A-208ENST00000534106 SPDYE4A6NLX3 237 aa7.8□□□□□ -1.16
CHMP4A-208ENST00000534106 STAG3Q9UJ98 1225 aa7.8□□□□□ -1.16
CHMP4A-208ENST00000534106 GABBR2O75899 941 aa7.78□□□□□ -1.16
CHMP4A-208ENST00000534106 FARP1Q9Y4F1 1045 aaPredicted RBP7.78□□□□□ -1.16
CHMP4A-208ENST00000534106 CD44P16070 742 aaKnown RBP7.77□□□□□ -1.17
CHMP4A-208ENST00000534106 CREBZFQ9NS37 354 aa7.69□□□□□ -1.18
CHMP4A-208ENST00000534106 ZRANB1Q9UGI0 708 aa7.68□□□□□ -1.18
CHMP4A-208ENST00000534106 PAK3O75914 559 aaPredicted RBP7.65□□□□□ -1.18
CHMP4A-208ENST00000534106 CLCN6P51797 869 aa7.64□□□□□ -1.19
CHMP4A-208ENST00000534106 NPM1P06748 294 aaKnown RBP eCLIP7.63□□□□□ -1.19
CHMP4A-208ENST00000534106 DCBLD2Q96PD2 775 aa7.63□□□□□ -1.19
CHMP4A-208ENST00000534106 LHX8Q68G74 356 aa7.61□□□□□ -1.19
CHMP4A-208ENST00000534106 ZNF579Q8NAF0 562 aaKnown RBP7.59□□□□□ -1.19
CHMP4A-208ENST00000534106 NISCHQ9Y2I1 1504 aa7.57□□□□□ -1.2
CHMP4A-208ENST00000534106 POTEIP0CG38 1075 aa7.56□□□□□ -1.2
CHMP4A-208ENST00000534106 PLEKHG5O94827 1062 aa7.54□□□□□ -1.2
CHMP4A-208ENST00000534106 GALR2O43603 387 aaPredicted RBP7.53□□□□□ -1.2
CHMP4A-208ENST00000534106 PHF12Q96QT6 1004 aa7.52□□□□□ -1.21
CHMP4A-208ENST00000534106 MNX1P50219 401 aaPredicted RBP7.5□□□□□ -1.21
CHMP4A-208ENST00000534106 MIER1Q8N108 512 aa7.5□□□□□ -1.21
CHMP4A-208ENST00000534106 PROM2Q8N271 834 aa7.49□□□□□ -1.21
CHMP4A-208ENST00000534106 TSPYL2Q9H2G4 693 aaPredicted RBP7.49□□□□□ -1.21
CHMP4A-208ENST00000534106 PLCD3Q8N3E9 789 aa7.44□□□□□ -1.22
CHMP4A-208ENST00000534106 MS4A3Q96HJ5 214 aa7.42□□□□□ -1.22
CHMP4A-208ENST00000534106 FKBP8Q14318 412 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms