RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 INO80DQ53TQ3 878 aaPredicted RBP9.12□□□□□ -0.95
LSM1-202ENST00000520286 C19orf54Q5BKX5 351 aa9.12□□□□□ -0.95
LSM1-202ENST00000520286 HEATR3Q7Z4Q2 680 aa9.12□□□□□ -0.95
LSM1-202ENST00000520286 RSPH3Q86UC2 560 aa9.12□□□□□ -0.95
LSM1-202ENST00000520286 MZB1Q8WU39 189 aa9.12□□□□□ -0.95
LSM1-202ENST00000520286 PHKBQ93100 1093 aa9.12□□□□□ -0.95
LSM1-202ENST00000520286 MTFMTQ96DP5 389 aaKnown RBP9.12□□□□□ -0.95
LSM1-202ENST00000520286 SLC35A4Q96G79 324 aa9.12□□□□□ -0.95
LSM1-202ENST00000520286 NOX5Q96PH1 765 aa9.12□□□□□ -0.95
LSM1-202ENST00000520286 LRRC27Q9C0I9 530 aa9.12□□□□□ -0.95
LSM1-202ENST00000520286 ZMAT3Q9HA38 289 aaKnown RBP9.12□□□□□ -0.95
LSM1-202ENST00000520286 ATP6V0A4Q9HBG4 840 aa9.12□□□□□ -0.95
LSM1-202ENST00000520286 EPB41L4AQ9HCS5 686 aaPredicted RBP9.12□□□□□ -0.95
LSM1-202ENST00000520286 DCP1AQ9NPI6 582 aaPredicted RBP9.12□□□□□ -0.95
LSM1-202ENST00000520286 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.11□□□□□ -0.95
LSM1-202ENST00000520286 PEX10O60683 326 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 ARIH2O95376 493 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 IGFBP6P24592 240 aaPredicted RBP9.11□□□□□ -0.95
LSM1-202ENST00000520286 PRIM2P49643 509 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 KCNQ1P51787 676 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 TARDBPQ13148 414 aaKnown RBP eCLIP9.11□□□□□ -0.95
LSM1-202ENST00000520286 HSP90AB4PQ58FF6 505 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 TAS1R1Q7RTX1 841 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 LINC00482Q8N8I6 264 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 CCHCR1Q8TD31 782 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 APIPQ96GX9 242 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 FAM167AQ96KS9 214 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 MRGPRX4Q96LA9 322 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 RIPOR3Q96MK2 946 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 UIMC1Q96RL1 719 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 VRK1Q99986 396 aaPredicted RBP9.11□□□□□ -0.95
LSM1-202ENST00000520286 BTBD1Q9H0C5 482 aa9.11□□□□□ -0.95
LSM1-202ENST00000520286 MYOCOSA0A1B0GUC4 107 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 PHGDHO43175 533 aaKnown RBP9.1□□□□□ -0.95
LSM1-202ENST00000520286 FRS3O43559 492 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 COL6A1P12109 1028 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 SMAD4Q13485 552 aaKnown RBP9.1□□□□□ -0.95
LSM1-202ENST00000520286 PLS1Q14651 629 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 KRT72Q14CN4 511 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 ZMYM1Q5SVZ6 1142 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 ANO1Q5XXA6 986 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 TMEM132EQ6IEE7 984 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 TRMT10BQ6PF06 316 aaKnown RBP9.1□□□□□ -0.95
LSM1-202ENST00000520286 DPP9Q86TI2 863 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 IGDCC3Q8IVU1 814 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 PQLC1Q8N2U9 271 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 SH2D3CQ8N5H7 860 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 MSL3Q8N5Y2 521 aaKnown RBP9.1□□□□□ -0.95
LSM1-202ENST00000520286 DEPTORQ8TB45 409 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 ZNF480Q8WV37 535 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 ZBTB8AQ96BR9 441 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 EVI5LQ96CN4 794 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 LIN37Q96GY3 246 aaPredicted RBP9.1□□□□□ -0.95
LSM1-202ENST00000520286 TMX3Q96JJ7 454 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 UHRF1Q96T88 793 aaPredicted RBP9.1□□□□□ -0.95
LSM1-202ENST00000520286 PDCD2LQ9BRP1 358 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 TLR9Q9NR96 1032 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 PNPOQ9NVS9 261 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 ABCF2Q9UG63 623 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 CORO2BQ9UQ03 480 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 VWA7Q9Y334 891 aa9.1□□□□□ -0.95
LSM1-202ENST00000520286 CCDC189A1A4V9 331 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 ZNF503-AS2A6NEH8 195 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 F5H423 210 aaPredicted RBP9.09□□□□□ -0.95
LSM1-202ENST00000520286 TYRP14679 529 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 POLD1P28340 1107 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 BTKQ06187 659 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 RAB39AQ14964 217 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 GADL1Q6ZQY3 521 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 OR2C3Q8N628 320 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 GFM2Q969S9 779 aaKnown RBP9.09□□□□□ -0.95
LSM1-202ENST00000520286 CYFIP2Q96F07 1278 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 DIRC2Q96SL1 478 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 SELENOOQ9BVL4 669 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 MCOLN1Q9GZU1 580 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 BCO1Q9HAY6 547 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 TRMT13Q9NUP7 481 aaKnown RBP9.09□□□□□ -0.95
LSM1-202ENST00000520286 CALCOCO1Q9P1Z2 691 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 SNX13Q9Y5W8 968 aa9.09□□□□□ -0.95
LSM1-202ENST00000520286 A0A1W2PPL8 197 aa9.08□□□□□ -0.96
LSM1-202ENST00000520286 KLRG2A4D1S0 409 aaPredicted RBP9.08□□□□□ -0.96
LSM1-202ENST00000520286 KPNA5O15131 536 aa9.08□□□□□ -0.96
LSM1-202ENST00000520286 HMGCRP04035 888 aa9.08□□□□□ -0.96
LSM1-202ENST00000520286 CASP5P51878 434 aa9.08□□□□□ -0.96
LSM1-202ENST00000520286 MLLT6P55198 1093 aaPredicted RBP9.08□□□□□ -0.96
LSM1-202ENST00000520286 SESN2P58004 480 aaPredicted RBP9.08□□□□□ -0.96
LSM1-202ENST00000520286 TOP3AQ13472 1001 aaPredicted RBP9.08□□□□□ -0.96
LSM1-202ENST00000520286 RTKN2Q8IZC4 609 aa9.08□□□□□ -0.96
LSM1-202ENST00000520286 OR7D4Q8NG98 312 aa9.08□□□□□ -0.96
LSM1-202ENST00000520286 IL31RAQ8NI17 732 aa9.08□□□□□ -0.96
LSM1-202ENST00000520286 POF1BQ8WVV4 589 aa9.08□□□□□ -0.96
LSM1-202ENST00000520286 ANKS1AQ92625 1134 aa9.08□□□□□ -0.96
LSM1-202ENST00000520286 EPB41L4BQ9H329 900 aa9.08□□□□□ -0.96
LSM1-202ENST00000520286 NSUN3Q9H649 340 aaKnown RBP9.08□□□□□ -0.96
LSM1-202ENST00000520286 C14orf93Q9H972 538 aaKnown RBP9.08□□□□□ -0.96
LSM1-202ENST00000520286 KIAA1586Q9HCI6 787 aa9.08□□□□□ -0.96
LSM1-202ENST00000520286 NESP48681 1621 aa9.08□□□□□ -0.96
LSM1-202ENST00000520286 MYBBP1AQ9BQG0 1328 aaKnown RBP9.07□□□□□ -0.96
LSM1-202ENST00000520286 TEX51A0A1B0GUA7 166 aa9.07□□□□□ -0.96
LSM1-202ENST00000520286 ALDH1A2O94788 518 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms