RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 CSTF1Q05048 431 aaKnown RBP15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 SNW1Q13573 536 aaKnown RBP15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 ST3GAL2Q16842 350 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 TSGA10IPQ3SY00 556 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 FUT10Q6P4F1 479 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 PSPC1Q8WXF1 523 aaKnown RBP15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 SLC7A3Q8WY07 619 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 CLDN23Q96B33 292 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 TCEANC2Q96MN5 208 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 RPP25Q9BUL9 199 aaKnown RBP15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 COLEC11Q9BWP8 271 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 FAM126AQ9BYI3 521 aaPredicted RBP15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 MINDY3Q9H8M7 445 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 LTB4R2Q9NPC1 389 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 PRMT8Q9NR22 394 aaPredicted RBP15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 FBXW11Q9UKB1 542 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 IPPQ9Y573 584 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 NOTCH4Q99466 2003 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 CYP3A7-CYP3A51PA0A087WV96 503 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 POU2F2P09086 479 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 CYP3A7P24462 503 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 AXLP30530 894 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 HOXA9P31269 272 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 MLH1P40692 756 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 UBXN2BQ14CS0 331 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 SLC44A4Q53GD3 710 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 GJA10Q969M2 543 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 GAD1Q99259 594 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 NELL2Q99435 816 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 C22orf23Q9BZE7 217 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 DHX33Q9H6R0 707 aaKnown RBP15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 ANO2Q9NQ90 1003 aa15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 MTF2Q9Y483 593 aaPredicted RBP15.92■□□□□ 0.14
PRPF40A-211ENST00000493468 FAM170BA6NMN3 283 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 F8W810 466 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 RFC5P40937 340 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 SCNN1GP51170 649 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 LAMTOR4Q0VGL1 99 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 ZBTB41Q5SVQ8 909 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 PLA2G4FQ68DD2 849 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 MOXD1Q6UVY6 613 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 GRASPQ7Z6J2 395 aaPredicted RBP15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 ETNPPLQ8TBG4 499 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 PRPF31Q8WWY3 499 aaKnown RBP15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 FGF13Q92913 245 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 GPR62Q9BZJ7 368 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 ADAM28Q9UKQ2 775 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 GIT1Q9Y2X7 761 aa15.91■□□□□ 0.14
PRPF40A-211ENST00000493468 NCAM2O15394 837 aa15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 ASAP2O43150 1006 aa15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 DKC1O60832 514 aaKnown RBP eCLIP15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 ERLIN2O94905 339 aa15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 HMGB1P09429 215 aaKnown RBP15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 SRGAP2CP0DJJ0 459 aa15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 NOTUMQ6P988 496 aa15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 TCP11Q8WWU5 503 aa15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 B3GALT6Q96L58 329 aa15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 ZFP42Q96MM3 310 aa15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 EIF2AQ9BY44 585 aaKnown RBP15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 RNF26Q9BY78 433 aaPredicted RBP15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 RNF39Q9H2S5 420 aa15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 MIOSQ9NXC5 875 aa15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 GMEB2Q9UKD1 530 aa15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 USP18Q9UMW8 372 aa15.9■□□□□ 0.14
PRPF40A-211ENST00000493468 DCDC2BA2VCK2 349 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 TSPAN1O60635 241 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 QARSP47897 775 aaKnown RBP15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 NPEPPSP55786 919 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 AKAP17AQ02040 695 aaKnown RBP15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 KRT32Q14532 448 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 LIN9Q5TKA1 542 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 GLYCTKQ8IVS8 523 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 HACE1Q8IYU2 909 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 GSTCDQ8NEC7 633 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 ST13P5Q8NFI4 369 aaPredicted RBP15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 TBCKQ8TEA7 893 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 PHF20Q9BVI0 1012 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 CSRNP2Q9H175 543 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 PARD6AQ9NPB6 346 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 SH3GLB2Q9NR46 395 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 VWA8A3KMH1 1905 aa15.89■□□□□ 0.13
PRPF40A-211ENST00000493468 SF3B1O75533 1304 aaKnown RBP eCLIP15.89■□□□□ 0.134e-7■■■■■ 86.2
PRPF40A-211ENST00000493468 LRP3O75074 770 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 XYLBO75191 536 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 TDP2O95551 362 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 RPL17P18621 184 aaKnown RBP15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 TARSP26639 723 aaKnown RBP15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 GRIK3Q13003 919 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 ADCK5Q3MIX3 580 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 RTP2Q5QGT7 225 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 PPM1LQ5SGD2 360 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 MAMSTRQ6ZN01 415 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 FERMT3Q86UX7 667 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 IFNLR1Q8IU57 520 aaPredicted RBP15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 RNF149Q8NC42 400 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 NETO1Q8TDF5 533 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 PIK3R5Q8WYR1 880 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 TMEM143Q96AN5 459 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 CEP170P1Q96L14 293 aa15.88■□□□□ 0.13
PRPF40A-211ENST00000493468 IER2Q9BTL4 223 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms