RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 RARGP13631 454 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 PDE1CQ14123 709 aaPredicted RBP13.67□□□□□ -0.22
SHOX2-205ENST00000490689 BRINP3Q76B58 766 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 DAGLBQ8NCG7 672 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 POP1Q99575 1024 aaKnown RBP13.67□□□□□ -0.22
SHOX2-205ENST00000490689 RUSC1Q9BVN2 902 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 IFT122Q9HBG6 1241 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 ABCB11O95342 1321 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 HNRNPH3P31942 346 aaKnown RBP13.67□□□□□ -0.22
SHOX2-205ENST00000490689 THEMIS2Q5TEJ8 643 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 PADI6Q6TGC4 694 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 AGGF1Q8N302 714 aaeCLIP13.67□□□□□ -0.22
SHOX2-205ENST00000490689 GRAMD1AQ96CP6 724 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 CFAP36Q96G28 342 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 CYP4F11Q9HBI6 524 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 ASAP2O43150 1006 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 DNAJC8O75937 253 aaPredicted RBP13.66□□□□□ -0.22
SHOX2-205ENST00000490689 NTSR2O95665 410 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 BMP3P12645 472 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 TNFRSF8P28908 595 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 PGM1P36871 562 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 ARSEP51690 589 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 DMP1Q13316 513 aaPredicted RBP13.66□□□□□ -0.22
SHOX2-205ENST00000490689 ORC2Q13416 577 aaPredicted RBP13.66□□□□□ -0.22
SHOX2-205ENST00000490689 HGSNATQ68CP4 663 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 FBXO33Q7Z6M2 555 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 SREK1Q8WXA9 508 aaKnown RBP13.66□□□□□ -0.22
SHOX2-205ENST00000490689 PURBQ96QR8 312 aaKnown RBP13.66□□□□□ -0.22
SHOX2-205ENST00000490689 SLC13A1Q9BZW2 595 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 TMEM117Q9H0C3 514 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 ATP2B4P23634 1241 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 CASP5P51878 434 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 ZNF543Q08ER8 600 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 MKRN3Q13064 507 aaKnown RBP13.66□□□□□ -0.22
SHOX2-205ENST00000490689 NKX1-1Q15270 411 aaPredicted RBP13.66□□□□□ -0.22
SHOX2-205ENST00000490689 RCN1Q15293 331 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 PDIK1LQ8N165 341 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 ZSWIM1Q9BR11 485 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 MMTAG2Q9BU76 263 aaKnown RBP13.66□□□□□ -0.22
SHOX2-205ENST00000490689 FGFBP2Q9BYJ0 223 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 PHTF1Q9UMS5 762 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 RIC1Q4ADV7 1423 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 RIPK2O43353 540 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 RTN2O75298 545 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 AP1G2O75843 785 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 CAMTA2O94983 1202 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 TMED1Q13445 227 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 COG2Q14746 738 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 RFX6Q8HWS3 928 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 ATL2Q8NHH9 583 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 DDX27Q96GQ7 796 aaKnown RBP13.66□□□□□ -0.22
SHOX2-205ENST00000490689 TRAIPQ9BWF2 469 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 TMEM206Q9H813 350 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 ANGPTL2Q9UKU9 493 aa13.66□□□□□ -0.22
SHOX2-205ENST00000490689 SNX3O60493 162 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 CBX6O95503 412 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 ENO1P06733 434 aaKnown RBP13.65□□□□□ -0.22
SHOX2-205ENST00000490689 ITIH2P19823 946 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 NWD1Q149M9 1564 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 SYDE2Q5VT97 1194 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 C3orf67Q6ZVT6 689 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 PAPOLBQ9NRJ5 636 aaKnown RBP13.65□□□□□ -0.22
SHOX2-205ENST00000490689 TAS2R14Q9NYV8 317 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 LRRIQ4A6NIV6 560 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 LMNAP02545 664 aaKnown RBP13.65□□□□□ -0.22
SHOX2-205ENST00000490689 KRT16P08779 473 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 NCF2P19878 526 aaPredicted RBP13.65□□□□□ -0.22
SHOX2-205ENST00000490689 SAT1P21673 171 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 HOXA7P31268 230 aaPredicted RBP13.65□□□□□ -0.22
SHOX2-205ENST00000490689 MARCKSL1P49006 195 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 STAT4Q14765 748 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 NPY5RQ15761 445 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 AOC3Q16853 763 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 ATP8B4Q8TF62 1192 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 SHISA4Q96DD7 197 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 KMT5AQ9NQR1 393 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 NR2E1Q9Y466 385 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 MYH8P13535 1937 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 TAL1P17542 331 aaPredicted RBP13.65□□□□□ -0.22
SHOX2-205ENST00000490689 MARK3P27448 753 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 MAGEA4P43358 317 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 NXNQ6DKJ4 435 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 LVRNQ6Q4G3 990 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 CEP70Q8NHQ1 597 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 CCDC17Q96LX7 622 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 ROPN1BQ9BZX4 212 aaPredicted RBP13.65□□□□□ -0.22
SHOX2-205ENST00000490689 ROPN1Q9HAT0 212 aaPredicted RBP13.65□□□□□ -0.22
SHOX2-205ENST00000490689 PFASO15067 1338 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 FLT1P17948 1338 aa13.65□□□□□ -0.22
SHOX2-205ENST00000490689 TCP10L2B9ZVM9 353 aa13.64□□□□□ -0.23
SHOX2-205ENST00000490689 UBAP1LF5GYI3 381 aa13.64□□□□□ -0.23
SHOX2-205ENST00000490689 STAM2O75886 525 aa13.64□□□□□ -0.23
SHOX2-205ENST00000490689 PYGMP11217 842 aa13.64□□□□□ -0.23
SHOX2-205ENST00000490689 NFIXQ14938 502 aa13.64□□□□□ -0.23
SHOX2-205ENST00000490689 DNAJC24Q6P3W2 148 aa13.64□□□□□ -0.23
SHOX2-205ENST00000490689 SCFD2Q8WU76 684 aa13.64□□□□□ -0.23
SHOX2-205ENST00000490689 DBNDD1Q9H9R9 158 aa13.64□□□□□ -0.23
SHOX2-205ENST00000490689 MRPL47Q9HD33 250 aaKnown RBP13.64□□□□□ -0.23
SHOX2-205ENST00000490689 ACP6Q9NPH0 428 aa13.64□□□□□ -0.23
SHOX2-205ENST00000490689 CAPN9O14815 690 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms