RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 COL14A1Q05707 1796 aaKnown RBP6.34□□□□□ -1.4
VPS50-214ENST00000477935 CASZ1Q86V15 1759 aa6.34□□□□□ -1.4
VPS50-214ENST00000477935 SHANK3Q9BYB0 1731 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 NUP155O75694 1391 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 GPRASP1Q5JY77 1395 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 ABCC11Q96J66 1382 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 MYOM1P52179 1685 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 PATE3B3GLJ2 98 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 MATN2O00339 956 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 ZEB2O60315 1214 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 OPHN1O60890 802 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 CR2P20023 1033 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 ESPNLQ6ZVH7 1005 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 TAX1BP1Q86VP1 789 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 DNERQ8NFT8 737 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 OR14K1Q8NGZ2 314 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 CFHR4Q92496 578 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 NKD2Q969F2 451 aaPredicted RBP6.33□□□□□ -1.4
VPS50-214ENST00000477935 DYDC2Q96IM9 177 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 DPYSL5Q9BPU6 564 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 PRKAB1Q9Y478 270 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 CTDP1Q9Y5B0 961 aaPredicted RBP6.33□□□□□ -1.4
VPS50-214ENST00000477935 OVOS2A0A0G2JMS6 1433 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 OVOS2A0A0J9YW53 1432 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 OVOS2Q6IE36 1432 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 KIF1AQ12756 1690 aa6.33□□□□□ -1.4
VPS50-214ENST00000477935 A0A0A6YYJ9 748 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 VIL1P09327 827 aaKnown RBP6.32□□□□□ -1.4
VPS50-214ENST00000477935 MAGEA10P43363 369 aaPredicted RBP6.32□□□□□ -1.4
VPS50-214ENST00000477935 HGFACQ04756 655 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 ICAM4Q14773 271 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 CT47A1Q5JQC4 288 aaPredicted RBP6.32□□□□□ -1.4
VPS50-214ENST00000477935 ZBTB41Q5SVQ8 909 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 KRT26Q7Z3Y9 468 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 AFAP1L2Q8N4X5 818 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 TTC9BQ8N6N2 239 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 C8orf49Q96NF6 230 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 C12orf65Q9H3J6 166 aaKnown RBP6.32□□□□□ -1.4
VPS50-214ENST00000477935 STK26Q9P289 416 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 PUF60Q9UHX1 559 aaKnown RBP6.32□□□□□ -1.4
VPS50-214ENST00000477935 DNAI1Q9UI46 699 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 ST6GALNAC2Q9UJ37 374 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 APOBEC2Q9Y235 224 aaKnown RBP6.32□□□□□ -1.4
VPS50-214ENST00000477935 NRAPQ86VF7 1730 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 NRXN1Q9ULB1 1477 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 CROCC2H7BZ55 1655 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 PCNTO95613 3336 aa6.32□□□□□ -1.4
VPS50-214ENST00000477935 MAFGO15525 162 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 CDC14BO60729 498 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 H2AFYO75367 372 aaKnown RBP6.31□□□□□ -1.4
VPS50-214ENST00000477935 PCDH8O95206 1070 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 SESN2P58004 480 aaPredicted RBP6.31□□□□□ -1.4
VPS50-214ENST00000477935 TCTN3Q6NUS6 607 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 FRMD7Q6ZUT3 714 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 GIMAP8Q8ND71 665 aaPredicted RBP6.31□□□□□ -1.4
VPS50-214ENST00000477935 CHST13Q8NET6 341 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 GFM2Q969S9 779 aaKnown RBP6.31□□□□□ -1.4
VPS50-214ENST00000477935 FERMT2Q96AC1 680 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 WDR92Q96MX6 357 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 NOL10Q9BSC4 688 aaKnown RBP6.31□□□□□ -1.4
VPS50-214ENST00000477935 KRTAP4-7Q9BYR0 210 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 CD248Q9HCU0 757 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 BCL9O00512 1426 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 TECPR2O15040 1411 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 KIAA0232Q92628 1395 aa6.31□□□□□ -1.4
VPS50-214ENST00000477935 MYPNQ86TC9 1320 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 ST20-MTHFSA0A0A6YYL1 179 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 FOXS1O43638 330 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 KDM1AO60341 852 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 RAB11FIP3O75154 756 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 PFKMP08237 780 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 DUSP8Q13202 625 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 HDGFL2Q7Z4V5 671 aaPredicted RBP6.3□□□□□ -1.4
VPS50-214ENST00000477935 RASSF3Q86WH2 238 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 CXorf67Q86X51 503 aaPredicted RBP6.3□□□□□ -1.4
VPS50-214ENST00000477935 LPPQ93052 612 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 SLC7A6OSQ96CW6 309 aaPredicted RBP6.3□□□□□ -1.4
VPS50-214ENST00000477935 KRTAP3-1Q9BYR8 98 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 SYNPO2Q9UMS6 1093 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 ZFR2Q9UPR6 939 aaKnown RBP6.3□□□□□ -1.4
VPS50-214ENST00000477935 PPP2R3BQ9Y5P8 575 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 RGPD3A6NKT7 1758 aaPredicted RBP6.3□□□□□ -1.4
VPS50-214ENST00000477935 RGPD4Q7Z3J3 1758 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 ADCY9O60503 1353 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 ANKRD30BQ9BXX2 1392 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 E9PCH4 1651 aa6.3□□□□□ -1.4
VPS50-214ENST00000477935 A0A0A6YYK5 440 aaPredicted RBP6.29□□□□□ -1.4
VPS50-214ENST00000477935 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.29□□□□□ -1.4
VPS50-214ENST00000477935 C2orf78A6NCI8 922 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 SLC26A4O43511 780 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 BRINP1O60477 761 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 ULK1O75385 1050 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 EYA4O95677 639 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 HNRNPLP14866 589 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS50-214ENST00000477935 CNGA1P29973 690 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 MANFP55145 182 aaKnown RBP6.29□□□□□ -1.4
VPS50-214ENST00000477935 ADAM17P78536 824 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 FSTL1Q12841 308 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 SSH2Q76I76 1423 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 FUKQ8N0W3 1084 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms