RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 SPATA31D4Q6ZUB0 917 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 KRT25Q7Z3Z0 450 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 HOMER1Q86YM7 354 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 MAP4K3Q8IVH8 894 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 ZNF843Q8N446 348 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 ITFG1Q8TB96 612 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 E2F7Q96AV8 911 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 NUSAP1Q9BXS6 441 aaKnown RBP9.12□□□□□ -0.95
USP54-211ENST00000474929 UBN1Q9NPG3 1134 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 JADE2Q9NQC1 790 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 CHST7Q9NS84 486 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 FAM105AQ9NUU6 356 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 EVLQ9UI08 416 aaPredicted RBP9.12□□□□□ -0.95
USP54-211ENST00000474929 SLC8A2Q9UPR5 921 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 TNNQ9UQP3 1299 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 EVPLQ92817 2033 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 IGKV6D-21A0A0A0MT36 114 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 PNMA6FA0A0J9YX94 578 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 CDX4O14627 284 aaPredicted RBP9.11□□□□□ -0.95
USP54-211ENST00000474929 ZNF263O14978 683 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 MICAL2O94851 1124 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 ITGB5P18084 799 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 CCNE1P24864 410 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 CYP2U1Q7Z449 544 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 RALGPS2Q86X27 583 aaPredicted RBP9.11□□□□□ -0.95
USP54-211ENST00000474929 HDDC3Q8N4P3 179 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 CHCHD4Q8N4Q1 142 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 NLRP7Q8WX94 980 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 ADAMTS14Q8WXS8 1223 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 FAM167AQ96KS9 214 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 SEC62Q99442 399 aaKnown RBP9.11□□□□□ -0.95
USP54-211ENST00000474929 COLEC11Q9BWP8 271 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 GCOM2Q9BZD3 368 aaPredicted RBP9.11□□□□□ -0.95
USP54-211ENST00000474929 RSAD1Q9HA92 442 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 UBIAD1Q9Y5Z9 338 aa9.11□□□□□ -0.95
USP54-211ENST00000474929 SALL3Q9BXA9 1300 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 PCNX2A6NKB5 2137 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 SPAARA0A1B0GVQ0 90 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 PALM3A6NDB9 673 aaPredicted RBP9.1□□□□□ -0.95
USP54-211ENST00000474929 FAM205CA6NFA0 338 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 ZNF197O14709 1029 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 FOXP2O15409 715 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 ZNF862O60290 1169 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 ATG7O95352 703 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 MYBP10242 640 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 GDI1P31150 447 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 ZNF76P36508 570 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 OR1G1P47890 313 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 GPC3P51654 580 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 KPNA1P52294 538 aaPredicted RBP9.1□□□□□ -0.95
USP54-211ENST00000474929 NTHL1P78549 312 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 SRSF1Q07955 248 aaKnown RBP eCLIP9.1□□□□□ -0.95
USP54-211ENST00000474929 MIS18BP1Q6P0N0 1132 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 CCNI2Q6ZMN8 369 aaPredicted RBP9.1□□□□□ -0.95
USP54-211ENST00000474929 Q6ZS52 159 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 PIP4P1Q86T03 277 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 CKAP2LQ8IYA6 745 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 CNNM3Q8NE01 707 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 KIF2CQ99661 725 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 DUSP15Q9H1R2 295 aaPredicted RBP9.1□□□□□ -0.95
USP54-211ENST00000474929 ZNF302Q9NR11 478 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 MARCH5Q9NX47 278 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 PKD2L1Q9P0L9 805 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 TCEAL9Q9UHQ7 104 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 PIN4Q9Y237 131 aaKnown RBP9.1□□□□□ -0.95
USP54-211ENST00000474929 PRG3Q9Y2Y8 225 aaPredicted RBP9.1□□□□□ -0.95
USP54-211ENST00000474929 ASCC3Q8N3C0 2202 aaKnown RBP9.1□□□□□ -0.95
USP54-211ENST00000474929 CACNA1EQ15878 2313 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 PIEZO2Q9H5I5 2752 aa9.1□□□□□ -0.95
USP54-211ENST00000474929 URB1O60287 2271 aaKnown RBP9.1□□□□□ -0.95
USP54-211ENST00000474929 SF3B1O75533 1304 aaKnown RBP eCLIP9.09□□□□□ -0.958e-6■■■■■ 107
USP54-211ENST00000474929 TEX51A0A1B0GUA7 166 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 CCDC194A0A1B0GVG4 234 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 CCL16O15467 120 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 EFEMP2O95967 443 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 KIF5BP33176 963 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 CLCN3P51790 818 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 ATXN3P54252 364 aaPredicted RBP9.09□□□□□ -0.95
USP54-211ENST00000474929 CFHR1Q03591 330 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 SEMA3BQ13214 749 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 GRM2Q14416 872 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 PTPAQ15257 358 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 TANGO2Q6ICL3 276 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 YAF2Q8IY57 180 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 SLC7A14Q8TBB6 771 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 ING5Q8WYH8 240 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 LPPQ93052 612 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 MCRS1Q96EZ8 462 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 ZSCAN10Q96SZ4 725 aaPredicted RBP9.09□□□□□ -0.95
USP54-211ENST00000474929 UBAC1Q9BSL1 405 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 PLA2G2FQ9BZM2 168 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 CHMP4BQ9H444 224 aaKnown RBP9.09□□□□□ -0.95
USP54-211ENST00000474929 APOBEC2Q9Y235 224 aaKnown RBP9.09□□□□□ -0.95
USP54-211ENST00000474929 SPTAN1Q13813 2472 aaKnown RBP9.09□□□□□ -0.95
USP54-211ENST00000474929 NUP205Q92621 2012 aa9.09□□□□□ -0.95
USP54-211ENST00000474929 PDCD11Q14690 1871 aaKnown RBP9.08□□□□□ -0.96
USP54-211ENST00000474929 COL6A6A6NMZ7 2263 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 TTC41PQ6P2S7 1318 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 SHROOM3Q8TF72 1996 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 ANKRD17O75179 2603 aaKnown RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms