RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 PON1P27169 355 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 RARRES1P49788 294 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 YWHAGP61981 247 aaKnown RBP eCLIP11.95□□□□□ -0.5
PTPRF-204ENST00000412568 ATP11AP98196 1134 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 NCOA4Q13772 614 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 TAOK1Q7L7X3 1001 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 ERO1BQ86YB8 467 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 GPRC5AQ8NFJ5 357 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 TRAPPC12Q8WVT3 735 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 TNFRSF25Q93038 417 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 OPTNQ96CV9 577 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 PNKPQ96T60 521 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 KCTD19Q17RG1 926 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-204ENST00000412568 Q4G0T1 1027 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 HHATQ5VTY9 493 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 DSTYKQ6XUX3 929 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 RFFLQ8WZ73 363 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 CCDC97Q96F63 343 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-204ENST00000412568 FAM84AQ96KN4 292 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 DNAJC7Q99615 494 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 WDR18Q9BV38 432 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 ADAM33Q9BZ11 813 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 PPP1R12CQ9BZL4 782 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 AGO4Q9HCK5 861 aaKnown RBP11.95□□□□□ -0.5
PTPRF-204ENST00000412568 A1CFQ9NQ94 594 aaKnown RBP11.95□□□□□ -0.5
PTPRF-204ENST00000412568 AGAP1Q9UPQ3 857 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 M0QYV0 167 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 XPOTO43592 962 aaKnown RBP11.95□□□□□ -0.5
PTPRF-204ENST00000412568 HLA-DRAP01903 254 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 H2AFXP16104 143 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-204ENST00000412568 ATP5DP30049 168 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 MAN1A1P33908 653 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 SYCP2LQ5T4T6 812 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 MOXD1Q6UVY6 613 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 TRIM11Q96F44 468 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 EFCC1Q9HA90 598 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 ANAPC5Q9UJX4 755 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 NOC2LQ9Y3T9 749 aaKnown RBP11.95□□□□□ -0.5
PTPRF-204ENST00000412568 HEY1Q9Y5J3 304 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 ATP9AO75110 1047 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 OATP04181 439 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 STX2P32856 288 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 PSMC1P62191 440 aaKnown RBP11.94□□□□□ -0.5
PTPRF-204ENST00000412568 PDCLQ13371 301 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 ALS2CLQ60I27 953 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 CHST13Q8NET6 341 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 NLGN2Q8NFZ4 835 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 GRK7Q8WTQ7 553 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 PRPF31Q8WWY3 499 aaKnown RBP11.94□□□□□ -0.5
PTPRF-204ENST00000412568 TACO1Q9BSH4 297 aaKnown RBP11.94□□□□□ -0.5
PTPRF-204ENST00000412568 SLC38A10Q9HBR0 1119 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 NOVA2Q9UNW9 492 aaKnown RBP11.94□□□□□ -0.5
PTPRF-204ENST00000412568 PIN4Q9Y237 131 aaKnown RBP11.94□□□□□ -0.5
PTPRF-204ENST00000412568 IRF6O14896 467 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 SLC16A3O15427 465 aaKnown RBP11.94□□□□□ -0.5
PTPRF-204ENST00000412568 KLRC4O43908 158 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 GRAP2O75791 330 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 STK10O94804 968 aaKnown RBP11.94□□□□□ -0.5
PTPRF-204ENST00000412568 ADORA2BP29275 332 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 RGS7P49802 495 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 NLRP11P59045 1033 aaKnown RBP11.94□□□□□ -0.5
PTPRF-204ENST00000412568 ZKSCAN8Q15776 578 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-204ENST00000412568 CCDC13Q8IYE1 715 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 WHAMMQ8TF30 809 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 SCFD2Q8WU76 684 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 DHX38Q92620 1227 aaKnown RBP11.94□□□□□ -0.5
PTPRF-204ENST00000412568 BTBD6Q96KE9 485 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 SPATC1LQ9H0A9 340 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 SNX9Q9Y5X1 595 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 UBE4BO95155 1302 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 MED7O43513 233 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 PRPSAP2O60256 369 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 PPFIA4O75335 1185 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 EGFRP00533 1210 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 ITGB5P18084 799 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 DSG3P32926 999 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 PCK1P35558 622 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 HERVK_113P62684 666 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 ITIH3Q06033 890 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 VGLL4Q14135 290 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 BBS9Q3SYG4 887 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 GLRA4Q5JXX5 417 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 CROCCP2Q86T23 111 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 DDX42Q86XP3 938 aaKnown RBP eCLIP11.94□□□□□ -0.5
PTPRF-204ENST00000412568 MAP7D3Q8IWC1 876 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 GPRASP2Q96D09 838 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 SMARCAD1Q9H4L7 1026 aa11.94□□□□□ -0.5
PTPRF-204ENST00000412568 RBM12Q9NTZ6 932 aaKnown RBP11.94□□□□□ -0.5
PTPRF-204ENST00000412568 ZBTB22O15209 634 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 PDGFRBP09619 1106 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 ITKQ08881 620 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 SURF1Q15526 300 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 GLE1Q53GS7 698 aaKnown RBP11.93□□□□□ -0.5
PTPRF-204ENST00000412568 SPOPLQ6IQ16 392 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 DARS2Q6PI48 645 aaKnown RBP11.93□□□□□ -0.5
PTPRF-204ENST00000412568 RNPC3Q96LT9 517 aaKnown RBP11.93□□□□□ -0.5
PTPRF-204ENST00000412568 RNF19AQ9NV58 838 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-204ENST00000412568 A0A1W2PQJ5 194 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 CCDC188H7C350 402 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms