RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SLFN5Q08AF3 891 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 SNX17Q15036 470 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 ARTNQ5T4W7 220 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 PHF19Q5T6S3 580 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 FMNL3Q8IVF7 1028 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 ASB15Q8WXK1 588 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 FOXRED1Q96CU9 486 aaPredicted RBP7.78□□□□□ -1.16
USP40-202ENST00000409945 C16orf92Q96LL3 132 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 EYA3Q99504 573 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 RTFDC1Q9BY42 306 aaPredicted RBP7.78□□□□□ -1.16
USP40-202ENST00000409945 METTL14Q9HCE5 456 aaKnown RBP7.78□□□□□ -1.16
USP40-202ENST00000409945 KCNH7Q9NS40 1196 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 ABCC4O15439 1325 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 PTPRCP08575 1304 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 ZNF521Q96K83 1311 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 SBF1O95248 1867 aa7.77□□□□□ -1.16
USP40-202ENST00000409945 PRAMEF25A6NGN4 478 aa7.77□□□□□ -1.17
USP40-202ENST00000409945 TOMM70O94826 608 aa7.77□□□□□ -1.17
USP40-202ENST00000409945 NEK2P51955 445 aa7.77□□□□□ -1.17
USP40-202ENST00000409945 ALDH1L2Q3SY69 923 aa7.77□□□□□ -1.17
USP40-202ENST00000409945 SLC4A10Q6U841 1118 aa7.77□□□□□ -1.17
USP40-202ENST00000409945 ANKRD18AQ8IVF6 992 aa7.77□□□□□ -1.17
USP40-202ENST00000409945 PANK1Q8TE04 598 aa7.77□□□□□ -1.17
USP40-202ENST00000409945 ERCC4Q92889 916 aaPredicted RBP7.77□□□□□ -1.17
USP40-202ENST00000409945 AHCYL2Q96HN2 611 aaKnown RBP7.77□□□□□ -1.17
USP40-202ENST00000409945 AP5M1Q9H0R1 490 aa7.77□□□□□ -1.17
USP40-202ENST00000409945 POFUT1Q9H488 388 aa7.77□□□□□ -1.17
USP40-202ENST00000409945 TNRC6CQ9HCJ0 1690 aaKnown RBP7.77□□□□□ -1.17
USP40-202ENST00000409945 ZNF277Q9NRM2 450 aaPredicted RBP7.77□□□□□ -1.17
USP40-202ENST00000409945 C9orf78Q9NZ63 289 aaPredicted RBP7.77□□□□□ -1.17
USP40-202ENST00000409945 HDAC5Q9UQL6 1122 aa7.77□□□□□ -1.17
USP40-202ENST00000409945 CCDC88AQ3V6T2 1871 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.76□□□□□ -1.17
USP40-202ENST00000409945 ZNF503-AS2A6NEH8 195 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 PPIP5K2O43314 1243 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 AKAP10O43572 662 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 PAPLNO95428 1278 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 LRG1P02750 347 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 IGHMBP2P38935 993 aaKnown RBP7.76□□□□□ -1.17
USP40-202ENST00000409945 RPS8P62241 208 aaKnown RBP7.76□□□□□ -1.17
USP40-202ENST00000409945 ZNF200P98182 395 aaPredicted RBP7.76□□□□□ -1.17
USP40-202ENST00000409945 ODF1Q14990 250 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 PCBP2Q15366 365 aaKnown RBP eCLIP7.76□□□□□ -1.17
USP40-202ENST00000409945 UNQ6494/PRO21346Q6UXR6 183 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 G2E3Q7L622 706 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 C11orf74Q86VG3 221 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 LIN37Q96GY3 246 aaPredicted RBP7.76□□□□□ -1.17
USP40-202ENST00000409945 SMC4Q9NTJ3 1288 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 BTBD7Q9P203 1132 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 TIAM2Q8IVF5 1701 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 DICER1Q9UPY3 1922 aaKnown RBP7.76□□□□□ -1.17
USP40-202ENST00000409945 PRPF3O43395 683 aaKnown RBP7.76□□□□□ -1.17
USP40-202ENST00000409945 NCKAP1LP55160 1127 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 CTSWP56202 376 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 GCKRQ14397 625 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 PAN2Q504Q3 1202 aaKnown RBP7.76□□□□□ -1.17
USP40-202ENST00000409945 UBE3BQ7Z3V4 1068 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 RTN4RL1Q86UN2 441 aaPredicted RBP7.76□□□□□ -1.17
USP40-202ENST00000409945 HOOK2Q96ED9 719 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 PEX11GQ96HA9 241 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 CCDC120Q96HB5 630 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 CEP89Q96ST8 783 aa7.76□□□□□ -1.17
USP40-202ENST00000409945 DBR1Q9UK59 544 aaKnown RBP7.76□□□□□ -1.17
USP40-202ENST00000409945 LAMB2P55268 1798 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 K7ESF4 209 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 PCDHGA12O60330 932 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 KDM1AO60341 852 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 HIP1RO75146 1068 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 IGKV5-2P06315 115 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 CLEC2LP0C7M8 214 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 MYBL2P10244 700 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 ZNF174Q15697 407 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 PTPN21Q16825 1174 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 CR1LQ2VPA4 569 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 PROSER1Q86XN7 944 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 NLGN4XQ8N0W4 816 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 MPHOSPH8Q99549 860 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 EDARQ9UNE0 448 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 PCDHGA9Q9Y5G4 932 aaKnown RBP7.75□□□□□ -1.17
USP40-202ENST00000409945 PCDHGA8Q9Y5G5 932 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 PCDHGA7Q9Y5G6 932 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 PCDHGA6Q9Y5G7 932 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 PCDHGA3Q9Y5H0 932 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 PCDHGA2Q9Y5H1 932 aa7.75□□□□□ -1.17
USP40-202ENST00000409945 KIF16BQ96L93 1317 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 IPO8O15397 1037 aaKnown RBP7.74□□□□□ -1.17
USP40-202ENST00000409945 SCGB1D2O95969 90 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 PHC1P78364 1004 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 FSTL1Q12841 308 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 TNIP1Q15025 636 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 NFE2Q16621 373 aaPredicted RBP7.74□□□□□ -1.17
USP40-202ENST00000409945 CYP4F22Q6NT55 531 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 CC2D1AQ6P1N0 951 aaPredicted RBP7.74□□□□□ -1.17
USP40-202ENST00000409945 EP400NLQ6ZTU2 488 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 TMC6Q7Z403 805 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 GPC2Q8N158 579 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 SLC39A2Q9NP94 309 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 NMRK2Q9NPI5 230 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 UCKL1Q9NWZ5 548 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 ZIM2Q9NZV7 527 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms