RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 HPS5Q9UPZ3 1129 aa17.52■□□□□ 0.4
SMARCA4-201ENST00000344626 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.52■□□□□ 0.4
SMARCA4-201ENST00000344626 EMSYQ7Z589 1322 aa17.52■□□□□ 0.4
SMARCA4-201ENST00000344626 INSRRP14616 1297 aa17.52■□□□□ 0.39
SMARCA4-201ENST00000344626 EPHB1P54762 984 aa17.52■□□□□ 0.39
SMARCA4-201ENST00000344626 NECAB2Q7Z6G3 386 aa17.52■□□□□ 0.39
SMARCA4-201ENST00000344626 PGBD3Q8N328 593 aa17.52■□□□□ 0.39
SMARCA4-201ENST00000344626 USP2O75604 605 aaPredicted RBP17.52■□□□□ 0.39
SMARCA4-201ENST00000344626 NDUFA10O95299 355 aa17.52■□□□□ 0.39
SMARCA4-201ENST00000344626 DNAJB2P25686 324 aa17.52■□□□□ 0.39
SMARCA4-201ENST00000344626 DCAF4L1Q3SXM0 396 aa17.52■□□□□ 0.39
SMARCA4-201ENST00000344626 MGAT5BQ3V5L5 792 aa17.52■□□□□ 0.39
SMARCA4-201ENST00000344626 RPUSD2Q8IZ73 545 aaKnown RBP17.52■□□□□ 0.39
SMARCA4-201ENST00000344626 PPP1R13LQ8WUF5 828 aa17.52■□□□□ 0.39
SMARCA4-201ENST00000344626 ZNF512Q96ME7 567 aaPredicted RBP17.52■□□□□ 0.39
SMARCA4-201ENST00000344626 PGRMC1O00264 195 aaKnown RBP17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 NEMP1O14524 444 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 EIF3DO15371 548 aaKnown RBP eCLIP17.51■□□□□ 0.391e-8■□□□□ 9.3
SMARCA4-201ENST00000344626 CSDE1O75534 798 aaKnown RBP17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 HPDP32754 393 aaPredicted RBP17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 RIOX1Q9H6W3 641 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 RIOK3O14730 519 aaKnown RBP17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 MOCS2O96007 188 aaPredicted RBP17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 TREML2Q5T2D2 321 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 RIOX2Q8IUF8 465 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 DNAJB3Q8WWF6 145 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 CNOT8Q9UFF9 292 aaKnown RBP17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 ADAMTS1Q9UHI8 967 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 HPCAL4Q9UM19 191 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 BAZ2BQ9UIF8 2168 aaKnown RBP17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 CA12O43570 354 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 MYBL1P10243 752 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 SDC4P31431 198 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 GLRA4Q5JXX5 417 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 NUDT18Q6ZVK8 323 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 C17orf53Q8N3J3 647 aaPredicted RBP17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 TSPYL2Q9H2G4 693 aaPredicted RBP17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 UNC45AQ9H3U1 944 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 IL17RBQ9NRM6 502 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 MFAP3LO75121 409 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 VIMP08670 466 aaKnown RBP17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 SEC23AQ15436 765 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 SKA2Q8WVK7 121 aaPredicted RBP17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 CYP26B1Q9NR63 512 aa17.51■□□□□ 0.39
SMARCA4-201ENST00000344626 TRIM49P0CI25 452 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 TRIM49CP0CI26 452 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 YBX3P16989 372 aaKnown RBP eCLIP17.5■□□□□ 0.395e-7■□□□□ 11.3
SMARCA4-201ENST00000344626 PTGISQ16647 500 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 HOXA2O43364 376 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 PPFIA4O75335 1185 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 RWDD2BP57060 319 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 GPC5P78333 572 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 CCDC144BQ3MJ40 725 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 KCNB2Q92953 911 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 DDX50Q9BQ39 737 aaKnown RBP17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 COLEC11Q9BWP8 271 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 APLP1P51693 650 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 TSTA3Q13630 321 aaPredicted RBP17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 DNAAF3Q8N9W5 541 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 EXOC4Q96A65 974 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 DPH5Q9H2P9 285 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 MOSPD1Q9UJG1 213 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 FZD9O00144 591 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 PTPN21Q16825 1174 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 SGSM1Q2NKQ1 1148 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 PASD1Q8IV76 773 aa17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 DIS3Q9Y2L1 958 aaKnown RBP17.5■□□□□ 0.39
SMARCA4-201ENST00000344626 ATP2C2O75185 946 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 ECEL1O95672 775 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 APOEP02649 317 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 PDGFRBP09619 1106 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 DYNLT1P63172 113 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 TFDP2Q14188 446 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 FAM110CQ1W6H9 321 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 SV2CQ496J9 727 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 NAA35Q5VZE5 725 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 MRC1P22897 1456 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 CYP11B2P19099 503 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 MFSD10Q14728 455 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 KRT71Q3SY84 523 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 PRPF31Q8WWY3 499 aaKnown RBP17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 RBM41Q96IZ5 413 aaKnown RBP17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 PFDN4Q9NQP4 134 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 FAM114A2Q9NRY5 505 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 TBC1D12O60347 775 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 ATP1A3P13637 1013 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 DRAP1Q14919 205 aaPredicted RBP17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 BTBD8Q5XKL5 378 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 TMEM60Q9H2L4 133 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 PCDHB12Q9Y5F1 795 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 FDPSP14324 419 aaKnown RBP17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 PGM5Q15124 567 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 ACCSLQ4AC99 568 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 DCP1BQ8IZD4 617 aaKnown RBP17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 SENP7Q9BQF6 1050 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 PPME1Q9Y570 386 aa17.49■□□□□ 0.39
SMARCA4-201ENST00000344626 RSPH10B2B2RC85 870 aa17.48■□□□□ 0.39
SMARCA4-201ENST00000344626 HMGCRP04035 888 aa17.48■□□□□ 0.39
SMARCA4-201ENST00000344626 RSPH10BP0C881 870 aa17.48■□□□□ 0.39
SMARCA4-201ENST00000344626 YWHAGP61981 247 aaKnown RBP eCLIP17.48■□□□□ 0.393e-6■■□□□ 13.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms