RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W YOL029CQ08187 201 aa2.58□□□□□ -2
UPF3YGR072W TPI1P00942 248 aaKnown RBP2.57□□□□□ -2
UPF3YGR072W RRT12P25381 491 aa2.57□□□□□ -2
UPF3YGR072W VPH2P32341 215 aa2.57□□□□□ -2
UPF3YGR072W PRS1P32895 427 aaKnown RBP2.57□□□□□ -2
UPF3YGR072W MRPS9P38120 278 aa2.57□□□□□ -2
UPF3YGR072W YHR045WP38775 560 aa2.57□□□□□ -2
UPF3YGR072W RPL10P41805 221 aaKnown RBP2.57□□□□□ -2
UPF3YGR072W YFL064CP43540 174 aa2.57□□□□□ -2
UPF3YGR072W YFL012WP43580 148 aa2.57□□□□□ -2
UPF3YGR072W LIF1P53150 421 aa2.57□□□□□ -2
UPF3YGR072W YNL134CP53912 376 aaKnown RBP2.57□□□□□ -2
UPF3YGR072W SEC10Q06245 871 aa2.57□□□□□ -2
UPF3YGR072W YDR018CQ12185 396 aa2.57□□□□□ -2
UPF3YGR072W TRM10Q12400 293 aa2.57□□□□□ -2
UPF3YGR072W RAX2Q12465 1220 aa2.57□□□□□ -2
UPF3YGR072W YMR316C-AI2HB70 103 aa2.56□□□□□ -2
UPF3YGR072W RPS19AP07280 144 aaKnown RBP2.56□□□□□ -2
UPF3YGR072W RPS19BP07281 144 aaPredicted RBP2.56□□□□□ -2
UPF3YGR072W CWP1P28319 239 aa2.56□□□□□ -2
UPF3YGR072W IMP1P28627 190 aa2.56□□□□□ -2
UPF3YGR072W SRB4P32569 687 aa2.56□□□□□ -2
UPF3YGR072W ZRT3P34240 503 aa2.56□□□□□ -2
UPF3YGR072W GPX1P36014 167 aa2.56□□□□□ -2
UPF3YGR072W MRP21P38175 177 aa2.56□□□□□ -2
UPF3YGR072W ASG7P46993 209 aa2.56□□□□□ -2
UPF3YGR072W YJR012CP47087 207 aa2.56□□□□□ -2
UPF3YGR072W TPN1P53099 579 aa2.56□□□□□ -2
UPF3YGR072W YGL118CP53132 145 aa2.56□□□□□ -2
UPF3YGR072W PEX31P53203 462 aa2.56□□□□□ -2
UPF3YGR072W MNT4P53745 580 aa2.56□□□□□ -2
UPF3YGR072W PET117Q02771 107 aa2.56□□□□□ -2
UPF3YGR072W RNY1Q02933 434 aaKnown RBP2.56□□□□□ -2
UPF3YGR072W YDR209CQ03480 137 aa2.56□□□□□ -2
UPF3YGR072W OST6Q03723 332 aa2.56□□□□□ -2
UPF3YGR072W TSA2Q04120 196 aa2.56□□□□□ -2
UPF3YGR072W RNH1Q04740 348 aa2.56□□□□□ -2
UPF3YGR072W YPL278CQ08990 100 aa2.56□□□□□ -2
UPF3YGR072W YAL067W-AQ8TGK6 75 aa2.56□□□□□ -2
UPF3YGR072W YAL064W-BO13512 126 aa2.55□□□□□ -2
UPF3YGR072W ADH1P00330 348 aaKnown RBP2.55□□□□□ -2
UPF3YGR072W CKA2P19454 339 aa2.55□□□□□ -2
UPF3YGR072W POF1P25576 258 aa2.55□□□□□ -2
UPF3YGR072W PEX3P28795 441 aa2.55□□□□□ -2
UPF3YGR072W ALK2P32789 676 aaPredicted RBP2.55□□□□□ -2
UPF3YGR072W MID2P36027 376 aa2.55□□□□□ -2
UPF3YGR072W MRPL3P36516 390 aa2.55□□□□□ -2
UPF3YGR072W FRM2P37261 193 aa2.55□□□□□ -2
UPF3YGR072W PRS4P38063 326 aaPredicted RBP2.55□□□□□ -2
UPF3YGR072W TCD1P38756 429 aa2.55□□□□□ -2
UPF3YGR072W EDC2P40023 145 aaPredicted RBP2.55□□□□□ -2
UPF3YGR072W IBA57P47158 497 aa2.55□□□□□ -2
UPF3YGR072W PGU1P47180 361 aa2.55□□□□□ -2
UPF3YGR072W PRP24P49960 444 aaKnown RBP2.55□□□□□ -2
UPF3YGR072W SRL4Q03085 281 aa2.55□□□□□ -2
UPF3YGR072W VPS60Q03390 229 aa2.55□□□□□ -2
UPF3YGR072W BOP2Q06150 570 aa2.55□□□□□ -2
UPF3YGR072W SDO1Q07953 250 aaKnown RBP2.55□□□□□ -2
UPF3YGR072W YOR114WQ12219 294 aa2.55□□□□□ -2
UPF3YGR072W SME1Q12330 94 aaPredicted RBP2.55□□□□□ -2
UPF3YGR072W YBL111CQ3E7Y5 667 aa2.55□□□□□ -2
UPF3YGR072W YOS9Q99220 542 aa2.55□□□□□ -2
UPF3YGR072W RPS3P05750 240 aaKnown RBP2.54□□□□□ -2
UPF3YGR072W PET494P07390 489 aaPredicted RBP2.54□□□□□ -2
UPF3YGR072W YCR016WP25617 290 aaKnown RBP2.54□□□□□ -2
UPF3YGR072W CAM1P29547 415 aaKnown RBP2.54□□□□□ -2
UPF3YGR072W YBR062CP38239 180 aa2.54□□□□□ -2
UPF3YGR072W MBA1P38300 278 aa2.54□□□□□ -2
UPF3YGR072W PRS2P38620 318 aaKnown RBP2.54□□□□□ -2
UPF3YGR072W BIG1P38813 335 aa2.54□□□□□ -2
UPF3YGR072W SEN34P39707 275 aa2.54□□□□□ -2
UPF3YGR072W SEO1P39709 593 aa2.54□□□□□ -2
UPF3YGR072W RRG9P40156 214 aa2.54□□□□□ -2
UPF3YGR072W UFE1P41834 346 aa2.54□□□□□ -2
UPF3YGR072W COQ5P49017 307 aa2.54□□□□□ -2
UPF3YGR072W YMR244WQ04018 355 aa2.54□□□□□ -2
UPF3YGR072W ECM11Q04110 302 aa2.54□□□□□ -2
UPF3YGR072W ARV1Q06541 321 aa2.54□□□□□ -2
UPF3YGR072W PAM18Q07914 168 aa2.54□□□□□ -2
UPF3YGR072W TY3A-GQ12173 290 aa2.54□□□□□ -2
UPF3YGR072W TY3A-IQ99219 290 aa2.54□□□□□ -2
UPF3YGR072W OSM1P21375 501 aaKnown RBP2.53□□□□□ -2
UPF3YGR072W VPS3P23643 1011 aa2.53□□□□□ -2
UPF3YGR072W KRE6P32486 720 aa2.53□□□□□ -2
UPF3YGR072W SKI2P35207 1287 aaKnown RBP RIP-Chip data2.53□□□□□ -2not detected
UPF3YGR072W ASP1P38986 381 aaPredicted RBP2.53□□□□□ -2
UPF3YGR072W FRT2P39734 528 aa2.53□□□□□ -2
UPF3YGR072W YER184CP39961 794 aa2.53□□□□□ -2
UPF3YGR072W YIL012WP40551 113 aa2.53□□□□□ -2
UPF3YGR072W YGR018CP53211 109 aa2.53□□□□□ -2
UPF3YGR072W CAX4P53223 239 aa2.53□□□□□ -2
UPF3YGR072W YNL040WP53960 456 aaPredicted RBP2.53□□□□□ -2
UPF3YGR072W TIM11P81449 96 aaPredicted RBP2.53□□□□□ -2
UPF3YGR072W CWC21Q03375 135 aaKnown RBP2.53□□□□□ -2
UPF3YGR072W KRE28Q04431 385 aa2.53□□□□□ -2
UPF3YGR072W MRX8Q05473 314 aa2.53□□□□□ -2
UPF3YGR072W ATG31Q12421 196 aa2.53□□□□□ -2
UPF3YGR072W DFM1Q12743 341 aaKnown RBP2.53□□□□□ -2
UPF3YGR072W STH1P32597 1359 aa2.52□□□□□ -2.01
UPF3YGR072W AUS1Q08409 1394 aa2.52□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 61.9 ms