RNA–Protein interactions for RNA: YDR034C-D

YDR034C-D, Transcript of Retrotransposon TYA Gag and TYB Pol genes, yeast

Gene YDR034C-D, Length 5,313 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YDR034C-D	YDR034C-D	YNL140C	P53910	189 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	MHR1	Q06630	226 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	RIO1	Q12196	484 aa	Known RBP	2.56	□□□□□ -2
YDR034C-D	YDR034C-D	YCT1	Q12235	531 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	SPT3	P06844	337 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	URA6	P15700	204 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	ATG15	P25641	520 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	VMA22	P38784	181 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	POG1	P40473	351 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	RPL27A	P0C2H6	136 aa	Known RBP	2.56	□□□□□ -2
YDR034C-D	YDR034C-D	RPL27B	P0C2H7	136 aa	Known RBP	2.56	□□□□□ -2
YDR034C-D	YDR034C-D	RPL23A	P0CX41	137 aa	Known RBP	2.56	□□□□□ -2
YDR034C-D	YDR034C-D	RPL23B	P0CX42	137 aa	Known RBP	2.56	□□□□□ -2
YDR034C-D	YDR034C-D	URE2	P23202	354 aa	Known RBP	2.56	□□□□□ -2
YDR034C-D	YDR034C-D	NAM9	P27929	486 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	MTC4	P38335	694 aa	Known RBP	2.56	□□□□□ -2
YDR034C-D	YDR034C-D	VRG4	P40107	337 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	PEX31	P53203	462 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	YNL234W	P53857	426 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	TIM44	Q01852	431 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	SDC1	Q03323	175 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	YDL114W	Q07530	308 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	AYT1	Q12226	474 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	DCN1	Q12395	269 aa		2.56	□□□□□ -2
YDR034C-D	YDR034C-D	MET2	P08465	486 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	GOS1	P38736	223 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	YIL152W	P40455	235 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	OST1	P41543	476 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	ILM1	P47155	203 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	NOC4	Q06512	552 aa	Predicted RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	ARR2	Q06597	130 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	MMT2	Q08970	484 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	ITR2	P30606	609 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	AGA1	P32323	725 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	FES1	P38260	290 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	MBA1	P38300	278 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	YIL169C	P40442	995 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	BMT5	P40493	336 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	ADO1	P47143	340 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	COS10	P52924	374 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	PEX30	Q06169	523 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	CRC1	Q12289	327 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	WIP1	Q2V2P8	89 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	RPL16B	P26785	198 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	ANR2	P36090	516 aa	Predicted RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	SEC72	P39742	193 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	YKE4	P40544	346 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	MRPL49	P40858	161 aa	Predicted RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	JAC1	P53193	184 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	VAC7	P53950	1165 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	RMI1	Q02685	241 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	YMR010W	Q03687	405 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	THP3	Q12049	470 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	ILV1	P00927	576 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	RPS14A	P06367	137 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	RPS14B	P39516	138 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	AZF1	P41696	914 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	GET1	P53192	235 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	UTP15	Q04305	513 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	MRX9	Q07349	420 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	YPD1	Q07688	167 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	TMS1	Q12116	473 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	UTP23	Q12339	254 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	JEN1	P36035	616 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	OPY1	P38271	328 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	LCB3	P47013	409 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	AVT1	P47082	602 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	CPR7	P47103	393 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	OST3	P48439	350 aa		2.55	□□□□□ -2
YDR034C-D	YDR034C-D	MSO1	P53604	210 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	TPS1	Q00764	495 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	USB1	Q12208	290 aa	Known RBP	2.55	□□□□□ -2
YDR034C-D	YDR034C-D	BNR1	P40450	1375 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	YHR139C-A	O13536	103 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	HEM4	P06174	275 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	MRP1	P10662	321 aa	Known RBP	2.54	□□□□□ -2
YDR034C-D	YDR034C-D	GRX2	P17695	143 aa	Known RBP	2.54	□□□□□ -2
YDR034C-D	YDR034C-D	CMK2	P22517	447 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	AEP1	P32493	518 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	FZO1	P38297	855 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	SDS24	P38314	527 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	FLO5	P38894	1075 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	FAR7	P43592	221 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	YPS5	P53057	165 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	YDC1	Q02896	317 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	ERP1	Q05359	219 aa	Known RBP	2.54	□□□□□ -2
YDR034C-D	YDR034C-D	IZH4	Q99393	312 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	CBP6	P07253	162 aa	Predicted RBP	2.54	□□□□□ -2
YDR034C-D	YDR034C-D	POP7	P38291	140 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	GRE3	P38715	327 aa	Known RBP RIP-Chip data	2.54	□□□□□ -2	not detected
YDR034C-D	YDR034C-D	TDA11	P38854	504 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	MRM2	P53123	320 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	RUB1	Q03919	77 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	YPR064W	Q12492	139 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	RPL15A	P05748	204 aa	Known RBP	2.54	□□□□□ -2
YDR034C-D	YDR034C-D	ATR1	P13090	542 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	SNA3	P14359	133 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	SNF6	P18888	332 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	CDC43	P18898	376 aa		2.54	□□□□□ -2
YDR034C-D	YDR034C-D	MIR1	P23641	311 aa	Known RBP	2.54	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 27.3 ms