RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 IFT74Q96LB3 600 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 PPP1R16BQ96T49 567 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 TMEM175Q9BSA9 504 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 BACH2Q9BYV9 841 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.63□□□□□ -0.55
LIG3-212ENST00000590181 PRMT7Q9NVM4 692 aaPredicted RBP11.63□□□□□ -0.55
LIG3-212ENST00000590181 SSX2IPQ9Y2D8 614 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 PCDHB2Q9Y5E7 798 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 ZNF292O60281 2723 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 A0A1B0GUA9 196 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 POTEMA6NI47 508 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 NR1I2O75469 434 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 ALDH2P05091 517 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 CCT6AP40227 531 aaKnown RBP11.62□□□□□ -0.55
LIG3-212ENST00000590181 NAMPTP43490 491 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 TOB1P50616 345 aaPredicted RBP11.62□□□□□ -0.55
LIG3-212ENST00000590181 RBM10P98175 930 aaKnown RBP11.62□□□□□ -0.55
LIG3-212ENST00000590181 ATP2C1P98194 919 aaPredicted RBP11.62□□□□□ -0.55
LIG3-212ENST00000590181 CUL4AQ13619 759 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 PTPN21Q16825 1174 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 PADI6Q6TGC4 694 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 ZBTB33Q86T24 672 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 GPR65Q8IYL9 337 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 ZNF579Q8NAF0 562 aaKnown RBP11.62□□□□□ -0.55
LIG3-212ENST00000590181 VN1R2Q8NFZ6 395 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 MICAL1Q8TDZ2 1067 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 PIGOQ8TEQ8 1089 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 ATOH1Q92858 354 aaPredicted RBP11.62□□□□□ -0.55
LIG3-212ENST00000590181 ASIC4Q96FT7 647 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 SH2D3AQ9BRG2 576 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 CSRNP2Q9H175 543 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 TLE6Q9H808 572 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 XPNPEP1Q9NQW7 623 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 GIT1Q9Y2X7 761 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 RBM19Q9Y4C8 960 aaKnown RBP11.62□□□□□ -0.55
LIG3-212ENST00000590181 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.62□□□□□ -0.55
LIG3-212ENST00000590181 IRAK3Q9Y616 596 aa11.62□□□□□ -0.55
LIG3-212ENST00000590181 INO80B-WBP1J3KQ70 363 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 ZBTB39O15060 712 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 MED24O75448 989 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 FGFR1P11362 822 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 HOXB8P17481 243 aaPredicted RBP11.61□□□□□ -0.55
LIG3-212ENST00000590181 ATF7P17544 494 aaPredicted RBP11.61□□□□□ -0.55
LIG3-212ENST00000590181 FOSBP53539 338 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 RNASELQ05823 741 aaKnown RBP11.61□□□□□ -0.55
LIG3-212ENST00000590181 MAPK6Q16659 721 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 CLLU1OSQ5K130 101 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 HYIQ5T013 277 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 CDCA2Q69YH5 1023 aaPredicted RBP11.61□□□□□ -0.55
LIG3-212ENST00000590181 SLC27A1Q6PCB7 646 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 TMEM184AQ6ZMB5 413 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 DDX53Q86TM3 631 aaKnown RBP11.61□□□□□ -0.55
LIG3-212ENST00000590181 KSR1Q8IVT5 923 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 RNF169Q8NCN4 708 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 SUSD6Q92537 303 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 TMEM169Q96HH4 297 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 DRC1Q96MC2 740 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 FAM193BQ96PV7 902 aaPredicted RBP11.61□□□□□ -0.55
LIG3-212ENST00000590181 ADPGKQ9BRR6 497 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 TRIM6Q9C030 488 aaPredicted RBP11.61□□□□□ -0.55
LIG3-212ENST00000590181 FZD8Q9H461 694 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 DPP7Q9UHL4 492 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 MORC2Q9Y6X9 1032 aaPredicted RBP11.61□□□□□ -0.55
LIG3-212ENST00000590181 GVINP1Q7Z2Y8 2422 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 FAM186AA6NE01 2351 aa11.61□□□□□ -0.55
LIG3-212ENST00000590181 RIF1Q5UIP0 2472 aaKnown RBP11.6□□□□□ -0.55
LIG3-212ENST00000590181 H0YCG3 227 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 FSCN2O14926 492 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 N4BP3O15049 544 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 PER2O15055 1255 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 OFD1O75665 1012 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 ITGA4P13612 1032 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 GLRA2P23416 452 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 SP100P23497 879 aaPredicted RBP11.6□□□□□ -0.55
LIG3-212ENST00000590181 MBTD1Q05BQ5 628 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 CAPSQ13938 189 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 SMC1AQ14683 1233 aaKnown RBP11.6□□□□□ -0.55
LIG3-212ENST00000590181 ELMSAN1Q6PJG2 1045 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 PPFIBP1Q86W92 1011 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 SLC39A11Q8N1S5 342 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 HELQQ8TDG4 1101 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 NTPCRQ9BSD7 190 aaKnown RBP11.6□□□□□ -0.55
LIG3-212ENST00000590181 IRF2BPLQ9H1B7 796 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 POLR3FQ9H1D9 316 aaPredicted RBP11.6□□□□□ -0.55
LIG3-212ENST00000590181 MINDY3Q9H8M7 445 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 RSAD1Q9HA92 442 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 RNF19AQ9NV58 838 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 KIAA1024Q9UPX6 916 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 PCDHB6Q9Y5E3 794 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 DMXL1Q9Y485 3027 aa11.6□□□□□ -0.55
LIG3-212ENST00000590181 LRRIQ4A6NIV6 560 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 H0Y858 1186 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 ACKR2O00590 384 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 WNT7AO00755 349 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 TSPAN1O60635 241 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 USO1O60763 962 aaKnown RBP11.59□□□□□ -0.55
LIG3-212ENST00000590181 CSDE1O75534 798 aaKnown RBP11.59□□□□□ -0.55
LIG3-212ENST00000590181 PDGFBP01127 241 aaPredicted RBP11.59□□□□□ -0.55
LIG3-212ENST00000590181 FGFR4P22455 802 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 AVPR2P30518 371 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms