RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 KINO60870 393 aaKnown RBP12.38□□□□□ -0.43
VPS4B-202ENST00000588059 SPATA31D3P0C874 917 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 HOXA11P31270 313 aaPredicted RBP12.38□□□□□ -0.43
VPS4B-202ENST00000588059 STARD6P59095 220 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 DSG1Q02413 1049 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 DSC1Q08554 894 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 ADCK5Q3MIX3 580 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 PLA2G4FQ68DD2 849 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 SPATA31D4Q6ZUB0 917 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 ANO5Q75V66 913 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 COLGALT2Q8IYK4 626 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 HDAC7Q8WUI4 952 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 NT5C3AQ9H0P0 336 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 MINDY3Q9H8M7 445 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 PIDD1Q9HB75 910 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 ZDHHC7Q9NXF8 308 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 COL4A3BPQ9Y5P4 624 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 ARID2Q68CP9 1835 aa12.38□□□□□ -0.43
VPS4B-202ENST00000588059 SPTLC1O15269 473 aa12.37□□□□□ -0.43
VPS4B-202ENST00000588059 PRPF3O43395 683 aaKnown RBP12.37□□□□□ -0.43
VPS4B-202ENST00000588059 TGM5O43548 720 aa12.37□□□□□ -0.43
VPS4B-202ENST00000588059 NCLP19338 710 aaKnown RBP12.37□□□□□ -0.43
VPS4B-202ENST00000588059 OR1G1P47890 313 aa12.37□□□□□ -0.43
VPS4B-202ENST00000588059 USP11P51784 963 aa12.37□□□□□ -0.43
VPS4B-202ENST00000588059 RNF20Q5VTR2 975 aa12.37□□□□□ -0.43
VPS4B-202ENST00000588059 PALB2Q86YC2 1186 aa12.37□□□□□ -0.43
VPS4B-202ENST00000588059 SMG8Q8ND04 991 aaKnown RBP12.37□□□□□ -0.43
VPS4B-202ENST00000588059 BICD2Q8TD16 824 aa12.37□□□□□ -0.43
VPS4B-202ENST00000588059 RPP25Q9BUL9 199 aaKnown RBP12.37□□□□□ -0.43
VPS4B-202ENST00000588059 PRKD2Q9BZL6 878 aa12.37□□□□□ -0.43
VPS4B-202ENST00000588059 PLEKHA4Q9H4M7 779 aa12.37□□□□□ -0.43
VPS4B-202ENST00000588059 NAP1L2Q9ULW6 460 aaPredicted RBP12.37□□□□□ -0.43
VPS4B-202ENST00000588059 NID2Q14112 1375 aa12.37□□□□□ -0.43
VPS4B-202ENST00000588059 CCDC196A0A1B0GTZ2 297 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 DDX11L8A8MPP1 907 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 C1RP00736 705 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 GPC5P78333 572 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 ZNF528Q3MIS6 628 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 Q4G0T1 1027 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 VARS2Q5ST30 1063 aaKnown RBP12.36□□□□□ -0.43
VPS4B-202ENST00000588059 LILRA6Q6PI73 481 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 SRGAP1Q7Z6B7 1085 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 GLYCTKQ8IVS8 523 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 RASEFQ8IZ41 740 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 CCDC148Q8NFR7 591 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 FGF14Q92915 247 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 PHKBQ93100 1093 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 SHDQ96IW2 340 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 B3GALT6Q96L58 329 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 GAD1Q99259 594 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 JPH2Q9BR39 696 aaPredicted RBP12.36□□□□□ -0.43
VPS4B-202ENST00000588059 DDX23Q9BUQ8 820 aaKnown RBP12.36□□□□□ -0.43
VPS4B-202ENST00000588059 CHST7Q9NS84 486 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 NCDNQ9UBB6 729 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 FBXO4Q9UKT5 387 aa12.36□□□□□ -0.43
VPS4B-202ENST00000588059 KANSL1LA0AUZ9 987 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 ARL5CA6NH57 179 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 GAS2O43903 313 aaKnown RBP12.35□□□□□ -0.43
VPS4B-202ENST00000588059 TDP2O95551 362 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 ITGA4P13612 1032 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 MLH1P40692 756 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 SCNN1GP51170 649 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 NPEPPSP55786 919 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 PSMC5P62195 406 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 TSGA10IPQ3SY00 556 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 PARM1Q6UWI2 310 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 ZNF579Q8NAF0 562 aaKnown RBP12.35□□□□□ -0.43
VPS4B-202ENST00000588059 CNNM3Q8NE01 707 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 ETNPPLQ8TBG4 499 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 TBCKQ8TEA7 893 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 PRPF31Q8WWY3 499 aaKnown RBP12.35□□□□□ -0.43
VPS4B-202ENST00000588059 PSPC1Q8WXF1 523 aaKnown RBP12.35□□□□□ -0.43
VPS4B-202ENST00000588059 ZFP42Q96MM3 310 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 EIF2AQ9BY44 585 aaKnown RBP12.35□□□□□ -0.43
VPS4B-202ENST00000588059 BCO2Q9BYV7 579 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 GPR62Q9BZJ7 368 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 RNF39Q9H2S5 420 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 UBN1Q9NPG3 1134 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.35□□□□□ -0.43
VPS4B-202ENST00000588059 SPATA6Q9NWH7 488 aaPredicted RBP12.35□□□□□ -0.43
VPS4B-202ENST00000588059 MIOSQ9NXC5 875 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 VPS54Q9P1Q0 977 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 FNIP2Q9P278 1114 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 IPPQ9Y573 584 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 PCDHGA2Q9Y5H1 932 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 ZFP37Q9Y6Q3 630 aaPredicted RBP12.35□□□□□ -0.43
VPS4B-202ENST00000588059 MAP1BP46821 2468 aaKnown RBP12.35□□□□□ -0.43
VPS4B-202ENST00000588059 NOTCH4Q99466 2003 aa12.35□□□□□ -0.43
VPS4B-202ENST00000588059 CYP3A7-CYP3A51PA0A087WV96 503 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 LAMTOR5O43504 91 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 ZMYND10O75800 440 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 SRGAP2CP0DJJ0 459 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 RPL17P18621 184 aaKnown RBP12.34□□□□□ -0.43
VPS4B-202ENST00000588059 FSHRP23945 695 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 CYP3A7P24462 503 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 ATXN1P54253 815 aaKnown RBP12.34□□□□□ -0.43
VPS4B-202ENST00000588059 LAMTOR4Q0VGL1 99 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 SNW1Q13573 536 aaKnown RBP12.34□□□□□ -0.43
VPS4B-202ENST00000588059 MLF2Q15773 248 aaPredicted RBP12.34□□□□□ -0.43
VPS4B-202ENST00000588059 NTRK3Q16288 839 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms