RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 MTHFRP42898 656 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 CYP4A11Q02928 519 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 MBTD1Q05BQ5 628 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 DSC1Q08554 894 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 XKR9Q5GH70 373 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 NCAPH2Q6IBW4 605 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 CPLX2Q6PUV4 134 aaKnown RBP7.5□□□□□ -1.21
VPS53-213ENST00000572334 COLGALT2Q8IYK4 626 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 ZDHHC14Q8IZN3 488 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 RNF149Q8NC42 400 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 NSUN7Q8NE18 718 aaKnown RBP7.5□□□□□ -1.21
VPS53-213ENST00000572334 PSPC1Q8WXF1 523 aaKnown RBP7.5□□□□□ -1.21
VPS53-213ENST00000572334 SLC7A3Q8WY07 619 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 CPB2Q96IY4 423 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 NECTIN4Q96NY8 510 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 IPO9Q96P70 1041 aaKnown RBP7.5□□□□□ -1.21
VPS53-213ENST00000572334 MTMR9Q96QG7 549 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 EIF2AK1Q9BQI3 630 aaKnown RBP7.5□□□□□ -1.21
VPS53-213ENST00000572334 TMEM175Q9BSA9 504 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 GBP3Q9H0R5 595 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 TMEM60Q9H2L4 133 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 ZSWIM4Q9H7M6 989 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 RSAD1Q9HA92 442 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 SORCS3Q9UPU3 1222 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 NR2E1Q9Y466 385 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 HES2Q9Y543 173 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 IPPQ9Y573 584 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 CNTNAP2Q9UHC6 1331 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 WDR87Q6ZQQ6 2873 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 EP300Q09472 2414 aaPredicted RBP7.49□□□□□ -1.21
VPS53-213ENST00000572334 DNAH14Q0VDD8 3507 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 ARL5CA6NH57 179 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 TTLL13PA6NNM8 815 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 BTBD18B2RXH4 712 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 ASAP2O43150 1006 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 B4GALT5O43286 388 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 GAS2O43903 313 aaKnown RBP7.49□□□□□ -1.21
VPS53-213ENST00000572334 JAK2O60674 1132 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 DKC1O60832 514 aaKnown RBP eCLIP7.49□□□□□ -1.213e-11■■■□□ 15.6
VPS53-213ENST00000572334 CDKL5O76039 1030 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 SOD2P04179 222 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 EDN1P05305 212 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 SPATA31C1P0DKV0 1188 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 ARF4P18085 180 aaPredicted RBP7.49□□□□□ -1.21
VPS53-213ENST00000572334 GLRA2P23416 452 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 KRT2P35908 639 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 RARRES1P49788 294 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 PTPN5P54829 565 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 ANAPC15P60006 121 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 RNASELQ05823 741 aaKnown RBP7.49□□□□□ -1.21
VPS53-213ENST00000572334 POU5F1BQ06416 359 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 CAPSQ13938 189 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 GIT2Q14161 759 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 KIAA0319Q5VV43 1072 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 CES5AQ6NT32 575 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 TMC5Q6UXY8 1006 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 GPR149Q86SP6 731 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 TPH2Q8IWU9 490 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 SUGP1Q8IWZ8 645 aaKnown RBP7.49□□□□□ -1.21
VPS53-213ENST00000572334 TMEM105Q8N8V8 129 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 TCP11Q8WWU5 503 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 GTF3C6Q969F1 213 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 PGBD4Q96DM1 585 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 ZFP42Q96MM3 310 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 GAD1Q99259 594 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 MTRQ99707 1265 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 HERC2P3Q9BVR0 1158 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 CXCL16Q9H2A7 254 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 RXFP1Q9HBX9 757 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 FAM86C1Q9NVL1 165 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 DZANK1Q9NVP4 752 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 LIMD1Q9UGP4 676 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 USTQ9Y2C2 406 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 FAN1Q9Y2M0 1017 aa7.49□□□□□ -1.21
VPS53-213ENST00000572334 CARNS1A5YM72 827 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 POTEMA6NI47 508 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 TEX28O15482 410 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 SEC24BO95487 1268 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 ALDH2P05091 517 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 SSBP05455 408 aaKnown RBP eCLIP7.48□□□□□ -1.21
VPS53-213ENST00000572334 ITGA4P13612 1032 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 NPR3P17342 541 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 KCNA4P22459 653 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 AXLP30530 894 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 CA8P35219 290 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 MLH1P40692 756 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 SCNN1GP51170 649 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 MTMR3Q13615 1198 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 ATAT1Q5SQI0 421 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 CWF19L1Q69YN2 538 aaKnown RBP7.48□□□□□ -1.21
VPS53-213ENST00000572334 OTUD6AQ7L8S5 288 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 CDR2LQ86X02 465 aaPredicted RBP7.48□□□□□ -1.21
VPS53-213ENST00000572334 SLFN12Q8IYM2 578 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 UBALD2Q8IYN6 164 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 CMASQ8NFW8 434 aaPredicted RBP7.48□□□□□ -1.21
VPS53-213ENST00000572334 URGCPQ8TCY9 931 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 PIGOQ8TEQ8 1089 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 BSNDQ8WZ55 320 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 PKNOX2Q96KN3 472 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 RPS6KC1Q96S38 1066 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms