RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 RESP18Q5W5W9 173 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 KRT79Q5XKE5 535 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 ZAR1Q86SH2 424 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 FAM43AQ8N2R8 423 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 ANKRD13CQ8N6S4 541 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 C4orf32Q8N8J7 132 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 FSIP1Q8NA03 581 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 GIMAP8Q8ND71 665 aaPredicted RBP5.62□□□□□ -1.51
VTI1B-202ENST00000553619 RASSF8Q8NHQ8 419 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 EZH1Q92800 747 aaPredicted RBP5.62□□□□□ -1.51
VTI1B-202ENST00000553619 GATA6Q92908 595 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 GPRASP2Q96D09 838 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 CDK5RAP3Q96JB5 506 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 PGBD1Q96JS3 809 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 MBOAT7Q96N66 472 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 TCF12Q99081 682 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 PTPN18Q99952 460 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 SDF4Q9BRK5 362 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 PDCD2LQ9BRP1 358 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 WDR11Q9BZH6 1224 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 CCSER1Q9C0I3 900 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 NT5C3AQ9H0P0 336 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 CUEDC2Q9H467 287 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 TTC12Q9H892 705 aaPredicted RBP5.62□□□□□ -1.51
VTI1B-202ENST00000553619 A1CFQ9NQ94 594 aaKnown RBP5.62□□□□□ -1.51
VTI1B-202ENST00000553619 PXMP2Q9NR77 195 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 CYP39A1Q9NYL5 469 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 LRWD1Q9UFC0 647 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 FBXO2Q9UK22 296 aaPredicted RBP5.62□□□□□ -1.51
VTI1B-202ENST00000553619 DIS3Q9Y2L1 958 aaKnown RBP5.62□□□□□ -1.51
VTI1B-202ENST00000553619 RIPK3Q9Y572 518 aa5.62□□□□□ -1.51
VTI1B-202ENST00000553619 KRTAP4-8A0A0G2JLE6 195 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 FAM237AA0A1B0GTK4 181 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 A0A1B0GVL5 298 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 SLC15A5A6NIM6 579 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 FAM155AB1AL88 458 aaPredicted RBP5.61□□□□□ -1.51
VTI1B-202ENST00000553619 MEIS1O00470 390 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 DKC1O60832 514 aaKnown RBP eCLIP5.61□□□□□ -1.51
VTI1B-202ENST00000553619 TDP2O95551 362 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 ECEL1O95672 775 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 PRNPP04156 253 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 TGFB3P10600 412 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 RAB6AP20340 208 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 HOXD10P28358 340 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 TECP42680 631 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 AMPD3Q01432 767 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 GRM1Q13255 1194 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 AXDND1Q5T1B0 1012 aaPredicted RBP5.61□□□□□ -1.51
VTI1B-202ENST00000553619 CCDC183Q5T5S1 534 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 KIAA0319Q5VV43 1072 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 RRAGBQ5VZM2 374 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 HAUS3Q68CZ6 603 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 CYP4F22Q6NT55 531 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 CAVIN1Q6NZI2 390 aaKnown RBP5.61□□□□□ -1.51
VTI1B-202ENST00000553619 PLEKHH3Q7Z736 793 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 DPP9Q86TI2 863 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 VSIG10LQ86VR7 867 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 CEP57L1Q8IYX8 460 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 RPTORQ8N122 1335 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 MSL3Q8N5Y2 521 aaKnown RBP5.61□□□□□ -1.51
VTI1B-202ENST00000553619 IQUBQ8NA54 791 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 CNNM3Q8NE01 707 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 CRYGNQ8WXF5 182 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 CCDC47Q96A33 483 aaKnown RBP5.61□□□□□ -1.51
VTI1B-202ENST00000553619 CHAMP1Q96JM3 812 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 CAPNS2Q96L46 248 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 CLIC6Q96NY7 704 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 MTMR9Q96QG7 549 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 FAM129BQ96TA1 746 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 RIT2Q99578 217 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 TRIM56Q9BRZ2 755 aaKnown RBP5.61□□□□□ -1.51
VTI1B-202ENST00000553619 ZNF577Q9BSK1 485 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 TEKT3Q9BXF9 490 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 GTPBP4Q9BZE4 634 aaKnown RBP5.61□□□□□ -1.51
VTI1B-202ENST00000553619 FTOQ9C0B1 505 aaKnown RBP eCLIP5.61□□□□□ -1.51
VTI1B-202ENST00000553619 CSRNP2Q9H175 543 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 NUP62CLQ9H1M0 184 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 TNMDQ9H2S6 317 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 MAGEF1Q9HAY2 307 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 KCNMB3Q9NPA1 279 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 JADE2Q9NQC1 790 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 KCNH3Q9ULD8 1083 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 AP4E1Q9UPM8 1137 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 KDM3AQ9Y4C1 1321 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 UBIAD1Q9Y5Z9 338 aa5.61□□□□□ -1.51
VTI1B-202ENST00000553619 FRMPD4Q14CM0 1322 aa5.6□□□□□ -1.51
VTI1B-202ENST00000553619 IPO5O00410 1097 aaKnown RBP5.6□□□□□ -1.51
VTI1B-202ENST00000553619 IGF2BP3O00425 579 aaKnown RBP eCLIP5.6□□□□□ -1.51
VTI1B-202ENST00000553619 ADAMTS3O15072 1205 aa5.6□□□□□ -1.51
VTI1B-202ENST00000553619 CYP26A1O43174 497 aa5.6□□□□□ -1.51
VTI1B-202ENST00000553619 GAS7O60861 476 aa5.6□□□□□ -1.51
VTI1B-202ENST00000553619 SMC2O95347 1197 aa5.6□□□□□ -1.51
VTI1B-202ENST00000553619 MYL1P05976 194 aa5.6□□□□□ -1.51
VTI1B-202ENST00000553619 PFKFB1P16118 471 aa5.6□□□□□ -1.51
VTI1B-202ENST00000553619 SFNP31947 248 aa5.6□□□□□ -1.51
VTI1B-202ENST00000553619 ICAM3P32942 547 aa5.6□□□□□ -1.51
VTI1B-202ENST00000553619 ALDH5A1P51649 535 aaPredicted RBP5.6□□□□□ -1.51
VTI1B-202ENST00000553619 ORC1Q13415 861 aa5.6□□□□□ -1.51
VTI1B-202ENST00000553619 MTMR1Q13613 665 aa5.6□□□□□ -1.51
VTI1B-202ENST00000553619 MAP7Q14244 749 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms