RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 CPB2Q96IY4 423 aa23.54■■□□□ 1.36
NEK3-202ENST00000550841 ACO2Q99798 780 aaKnown RBP23.54■■□□□ 1.36
NEK3-202ENST00000550841 STRA6Q9BX79 667 aa23.54■■□□□ 1.36
NEK3-202ENST00000550841 TMEM206Q9H813 350 aa23.54■■□□□ 1.36
NEK3-202ENST00000550841 TNFSF13BQ9Y275 285 aa23.54■■□□□ 1.36
NEK3-202ENST00000550841 C9IYK1 514 aa23.53■■□□□ 1.36
NEK3-202ENST00000550841 EIF3DO15371 548 aaKnown RBP eCLIP23.53■■□□□ 1.36
NEK3-202ENST00000550841 ZC2HC1CQ53FD0 456 aaPredicted RBP23.53■■□□□ 1.36
NEK3-202ENST00000550841 L1TD1Q5T7N2 865 aaKnown RBP23.53■■□□□ 1.36
NEK3-202ENST00000550841 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.53■■□□□ 1.36
NEK3-202ENST00000550841 TRIM6Q9C030 488 aaPredicted RBP23.53■■□□□ 1.36
NEK3-202ENST00000550841 ELAC1Q9H777 363 aaKnown RBP23.53■■□□□ 1.36
NEK3-202ENST00000550841 CXXC1Q9P0U4 656 aaPredicted RBP23.53■■□□□ 1.36
NEK3-202ENST00000550841 LRFN2Q9ULH4 789 aa23.53■■□□□ 1.36
NEK3-202ENST00000550841 PCDHB7Q9Y5E2 793 aa23.53■■□□□ 1.36
NEK3-202ENST00000550841 PCDHA5Q9Y5H7 936 aa23.53■■□□□ 1.36
NEK3-202ENST00000550841 MICAL3Q7RTP6 2002 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 ZNF623O75123 536 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 PPP1R37O75864 691 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 KIF20AO95235 890 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 EOMESO95936 686 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 MYBP10242 640 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 LIG4P49917 911 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 FAM109BQ6ICB4 259 aaPredicted RBP23.52■■□□□ 1.36
NEK3-202ENST00000550841 NPAS4Q8IUM7 802 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 MAP4K3Q8IVH8 894 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 HACE1Q8IYU2 909 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 MYOCDQ8IZQ8 938 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 SPATA20Q8TB22 786 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 LINC01599Q8WXQ3 324 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 TOP1MTQ969P6 601 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 PGBD4Q96DM1 585 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 TCHPQ9BT92 498 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 TARS2Q9BW92 718 aaKnown RBP23.52■■□□□ 1.36
NEK3-202ENST00000550841 CLSTN2Q9H4D0 955 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 SLC39A2Q9NP94 309 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 FAM105AQ9NUU6 356 aa23.52■■□□□ 1.36
NEK3-202ENST00000550841 TOM1L1O75674 476 aa23.51■■□□□ 1.35
NEK3-202ENST00000550841 PIGRP01833 764 aa23.51■■□□□ 1.35
NEK3-202ENST00000550841 ATP2A2P16615 1042 aaKnown RBP23.51■■□□□ 1.35
NEK3-202ENST00000550841 DCAF4L1Q3SXM0 396 aa23.51■■□□□ 1.35
NEK3-202ENST00000550841 ECHDC2Q86YB7 292 aa23.51■■□□□ 1.35
NEK3-202ENST00000550841 SYCP3Q8IZU3 236 aa23.51■■□□□ 1.35
NEK3-202ENST00000550841 ZNF507Q8TCN5 953 aa23.51■■□□□ 1.35
NEK3-202ENST00000550841 GPT2Q8TD30 523 aa23.51■■□□□ 1.35
NEK3-202ENST00000550841 HPS3Q969F9 1004 aa23.51■■□□□ 1.35
NEK3-202ENST00000550841 PDZD7Q9H5P4 517 aa23.51■■□□□ 1.35
NEK3-202ENST00000550841 TMEM161AQ9NX61 479 aa23.51■■□□□ 1.35
NEK3-202ENST00000550841 PCDHB2Q9Y5E7 798 aa23.51■■□□□ 1.35
NEK3-202ENST00000550841 UBE4BO95155 1302 aa23.51■■□□□ 1.35
NEK3-202ENST00000550841 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.5■■□□□ 1.35
NEK3-202ENST00000550841 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.5■■□□□ 1.35
NEK3-202ENST00000550841 CAMK4Q16566 473 aa23.5■■□□□ 1.35
NEK3-202ENST00000550841 UBXN11Q5T124 520 aa23.5■■□□□ 1.35
NEK3-202ENST00000550841 SLFN12LQ6IEE8 588 aa23.5■■□□□ 1.35
NEK3-202ENST00000550841 EPM2AIP1Q7L775 607 aaPredicted RBP23.5■■□□□ 1.35
NEK3-202ENST00000550841 NUP62CLQ9H1M0 184 aa23.5■■□□□ 1.35
NEK3-202ENST00000550841 TTC3P53804 2025 aa23.5■■□□□ 1.35
NEK3-202ENST00000550841 TTLL13PA6NNM8 815 aa23.49■■□□□ 1.35
NEK3-202ENST00000550841 HNRNPDLO14979 420 aaKnown RBP23.49■■□□□ 1.35
NEK3-202ENST00000550841 CLDN3O15551 220 aa23.49■■□□□ 1.35
NEK3-202ENST00000550841 HOXA2O43364 376 aa23.49■■□□□ 1.35
NEK3-202ENST00000550841 PRPF6O94906 941 aaKnown RBP23.49■■□□□ 1.35
NEK3-202ENST00000550841 CASP5P51878 434 aa23.49■■□□□ 1.35
NEK3-202ENST00000550841 DEFB103AP81534 67 aa23.49■■□□□ 1.35
NEK3-202ENST00000550841 STK4Q13043 487 aa23.49■■□□□ 1.35
NEK3-202ENST00000550841 MPZL3Q6UWV2 235 aa23.49■■□□□ 1.35
NEK3-202ENST00000550841 MRPL10Q7Z7H8 261 aaKnown RBP23.49■■□□□ 1.35
NEK3-202ENST00000550841 ZBED2Q9BTP6 218 aa23.49■■□□□ 1.35
NEK3-202ENST00000550841 PTPRHQ9HD43 1115 aa23.49■■□□□ 1.35
NEK3-202ENST00000550841 UBN1Q9NPG3 1134 aa23.49■■□□□ 1.35
NEK3-202ENST00000550841 KIAA1468Q9P260 1216 aa23.49■■□□□ 1.35
NEK3-202ENST00000550841 LAMA3Q16787 3333 aa23.48■■□□□ 1.35
NEK3-202ENST00000550841 UPP2O95045 317 aa23.48■■□□□ 1.35
NEK3-202ENST00000550841 NPTXRO95502 500 aa23.48■■□□□ 1.35
NEK3-202ENST00000550841 EDN1P05305 212 aa23.48■■□□□ 1.35
NEK3-202ENST00000550841 MCF2P10911 925 aa23.48■■□□□ 1.35
NEK3-202ENST00000550841 PROZP22891 400 aa23.48■■□□□ 1.35
NEK3-202ENST00000550841 MATR3P43243 847 aaKnown RBP eCLIP23.48■■□□□ 1.35
NEK3-202ENST00000550841 SNRPFP62306 86 aaKnown RBP23.48■■□□□ 1.35
NEK3-202ENST00000550841 HERC6Q8IVU3 1022 aa23.48■■□□□ 1.35
NEK3-202ENST00000550841 RSPH1Q8WYR4 309 aa23.48■■□□□ 1.35
NEK3-202ENST00000550841 USP20Q9Y2K6 914 aa23.48■■□□□ 1.35
NEK3-202ENST00000550841 KYAT1Q16773 422 aa23.47■■□□□ 1.35
NEK3-202ENST00000550841 BMT2Q1RMZ1 405 aa23.47■■□□□ 1.35
NEK3-202ENST00000550841 ZNF568Q3ZCX4 644 aa23.47■■□□□ 1.35
NEK3-202ENST00000550841 ZNF697Q5TEC3 545 aa23.47■■□□□ 1.35
NEK3-202ENST00000550841 ZNF658Q5TYW1 1059 aaPredicted RBP23.47■■□□□ 1.35
NEK3-202ENST00000550841 CDR2LQ86X02 465 aaPredicted RBP23.47■■□□□ 1.35
NEK3-202ENST00000550841 SCFD1Q8WVM8 642 aa23.47■■□□□ 1.35
NEK3-202ENST00000550841 FAM161BQ96MY7 647 aa23.47■■□□□ 1.35
NEK3-202ENST00000550841 EIF2AQ9BY44 585 aaKnown RBP23.47■■□□□ 1.35
NEK3-202ENST00000550841 FGFBP2Q9BYJ0 223 aa23.47■■□□□ 1.35
NEK3-202ENST00000550841 CGNQ9P2M7 1197 aaKnown RBP23.47■■□□□ 1.35
NEK3-202ENST00000550841 GJB5O95377 273 aa23.46■■□□□ 1.35
NEK3-202ENST00000550841 ITGA4P13612 1032 aa23.46■■□□□ 1.35
NEK3-202ENST00000550841 IBSPP21815 317 aaPredicted RBP23.46■■□□□ 1.35
NEK3-202ENST00000550841 MCL1Q07820 350 aa23.46■■□□□ 1.35
NEK3-202ENST00000550841 KNOP1Q1ED39 458 aaKnown RBP23.46■■□□□ 1.35
NEK3-202ENST00000550841 EEF1DP3Q658K8 133 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms