RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 DSC1Q08554 894 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 CALCRLQ16602 461 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 AMHR2Q16671 573 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 ME3Q16798 604 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 NOTUMQ6P988 496 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 COLGALT2Q8IYK4 626 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 RNF168Q8IYW5 571 aaPredicted RBP12.64□□□□□ -0.39
VPS28-214ENST00000531032 NECAB1Q8N987 351 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 NSUN7Q8NE18 718 aaKnown RBP12.64□□□□□ -0.39
VPS28-214ENST00000531032 FEZF2Q8TBJ5 459 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 KLHL5Q96PQ7 755 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 EMILIN2Q9BXX0 1053 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 EIF2AQ9BY44 585 aaKnown RBP12.64□□□□□ -0.39
VPS28-214ENST00000531032 NFKBIZQ9BYH8 718 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 ANKEF1Q9NU02 776 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 MARCH5Q9NX47 278 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 DBR1Q9UK59 544 aaKnown RBP12.64□□□□□ -0.39
VPS28-214ENST00000531032 PCDHA12Q9UN75 941 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 FAN1Q9Y2M0 1017 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 MYO10Q9HD67 2058 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 C2orf16Q68DN1 1984 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 TDRD15B5MCY1 1934 aaKnown RBP12.63□□□□□ -0.39
VPS28-214ENST00000531032 ARL5CA6NH57 179 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 EFEMP2O95967 443 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 PDGFBP01127 241 aaPredicted RBP12.63□□□□□ -0.39
VPS28-214ENST00000531032 SOD2P04179 222 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 SSBP05455 408 aaKnown RBP eCLIP12.63□□□□□ -0.39
VPS28-214ENST00000531032 ITGA4P13612 1032 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 KLRC2P26717 231 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 ARL2P36404 184 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 MLH1P40692 756 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 RARRES1P49788 294 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 NUBP1P53384 320 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 MBTD1Q05BQ5 628 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 CAPSQ13938 189 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 TFDP1Q14186 410 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 TMC5Q6UXY8 1006 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 GPR149Q86SP6 731 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 PLCD3Q8N3E9 789 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 ASAP3Q8TDY4 903 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 CPB2Q96IY4 423 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 GAD1Q99259 594 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 HERC2P3Q9BVR0 1158 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 CSRNP2Q9H175 543 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 TTC12Q9H892 705 aaPredicted RBP12.63□□□□□ -0.39
VPS28-214ENST00000531032 MRPL17Q9NRX2 175 aaKnown RBP12.63□□□□□ -0.39
VPS28-214ENST00000531032 USP34Q70CQ2 3546 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 CACNA1HO95180 2353 aa12.63□□□□□ -0.39
VPS28-214ENST00000531032 BTBD18B2RXH4 712 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 INO80B-WBP1J3KQ70 363 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 WNT7AO00755 349 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 NEMFO60524 1076 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 URODP06132 367 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 ASGR2P07307 311 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 ARF4P18085 180 aaPredicted RBP12.62□□□□□ -0.39
VPS28-214ENST00000531032 NCBP1Q09161 790 aaKnown RBP12.62□□□□□ -0.39
VPS28-214ENST00000531032 C15orf39Q6ZRI6 1047 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 CCDC149Q6ZUS6 474 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 DIS3L2Q8IYB7 885 aaKnown RBP12.62□□□□□ -0.39
VPS28-214ENST00000531032 MTMR9Q96QG7 549 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 RPS6KC1Q96S38 1066 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 RNF39Q9H2S5 420 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 SMOC2Q9H3U7 446 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 LIMD1Q9UGP4 676 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 SSX2IPQ9Y2D8 614 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 GIT1Q9Y2X7 761 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 PRG3Q9Y2Y8 225 aaPredicted RBP12.62□□□□□ -0.39
VPS28-214ENST00000531032 HES2Q9Y543 173 aa12.62□□□□□ -0.39
VPS28-214ENST00000531032 PLXNA3P51805 1871 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 ZMYM2Q9UBW7 1377 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 JAK2O60674 1132 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 XRCC6P12956 609 aaKnown RBP eCLIP12.61□□□□□ -0.397e-6■□□□□ 8.8
VPS28-214ENST00000531032 GLRA2P23416 452 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 TXKP42681 527 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 OR1G1P47890 313 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 SCNN1GP51170 649 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 KIAA0319Q5VV43 1072 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 TAS1R1Q7RTX1 841 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 GSTCDQ8NEC7 633 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 CMASQ8NFW8 434 aaPredicted RBP12.61□□□□□ -0.39
VPS28-214ENST00000531032 ZFP42Q96MM3 310 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 RHOBTB2Q9BYZ6 727 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 IRF2BPLQ9H1B7 796 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 NXF3Q9H4D5 531 aaKnown RBP12.61□□□□□ -0.39
VPS28-214ENST00000531032 MIOSQ9NXC5 875 aa12.61□□□□□ -0.39
VPS28-214ENST00000531032 A0A1B0GUA9 196 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 POTEMA6NI47 508 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 SPDYE4A6NLX3 237 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 F8W810 466 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 C2CD2LO14523 706 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 TEX28O15482 410 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 B4GALT5O43286 388 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 PAPLNO95428 1278 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 ADH1AP07327 375 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 SPATA31C1P0DKV0 1188 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 GLUD2P49448 558 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 DSG1Q02413 1049 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 ST3GAL1Q11201 340 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 TRIM29Q14134 588 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 SLC27A1Q6PCB7 646 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms