RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 PPP4R3AQ6IN85 833 aa5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 SLC4A10Q6U841 1118 aa5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 RALYLQ86SE5 291 aaKnown RBP5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 FAM124AQ86V42 546 aa5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 DIS3LQ8TF46 1054 aaKnown RBP5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 RUNDC1Q96C34 613 aa5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 SLC7A6OSQ96CW6 309 aaPredicted RBP5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 MBD6Q96DN6 1003 aa5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 C1GALT1C1Q96EU7 318 aa5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 C1orf112Q9NSG2 853 aa5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 ING3Q9NXR8 418 aa5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 CFAP20Q9Y6A4 193 aaKnown RBP5.23□□□□□ -1.57
HMGB1P28-201ENST00000507778 ENDOD1O94919 500 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 KRT18P05783 430 aaKnown RBP5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 ECHS1P30084 290 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 PER3P56645 1201 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 WNT3AP56704 352 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 ATP2C1P98194 919 aaPredicted RBP5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 IL10RAQ13651 578 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 SEPT2Q15019 361 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 ZNF124Q15973 351 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 ZNF568Q3ZCX4 644 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 CCSAPQ6IQ19 270 aaPredicted RBP5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 CCDC146Q8IYE0 955 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 MSL3Q8N5Y2 521 aaKnown RBP5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 MARCH10Q8NA82 808 aaPredicted RBP5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 OR2I1PQ8NGU4 316 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 HOXB13Q92826 284 aaPredicted RBP5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 SLC6A15Q9H2J7 730 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 TLR9Q9NR96 1032 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 PCDHA13Q9Y5I0 950 aa5.22□□□□□ -1.57
HMGB1P28-201ENST00000507778 CCDC194A0A1B0GVG4 234 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 ARHGAP6O43182 974 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 B4GALT4O60513 344 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 TOX4O94842 621 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 GASTP01350 101 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 JUNP05412 331 aaKnown RBP5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 VSIG10L2P0DP72 767 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 FXR1P51114 621 aaKnown RBP eCLIP5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 ADCY7P51828 1080 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 GJA9P57773 515 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 BPIFB4P59827 614 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 GBX1Q14549 363 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 TBR1Q16650 682 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 MST1LQ2TV78 715 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 KRT40Q6A162 431 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 Q6ZVL8 140 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 TTC7BQ86TV6 843 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 CCAR1Q8IX12 1150 aaKnown RBP5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 RHOT1Q8IXI2 618 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 KBTBD2Q8IY47 623 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 CAMKK1Q8N5S9 505 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 ZNF480Q8WV37 535 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 KAT5Q92993 513 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 ACO2Q99798 780 aaKnown RBP5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 MANSC1Q9H8J5 431 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 BCO1Q9HAY6 547 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 JADE2Q9NQC1 790 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 GPRC5DQ9NZD1 345 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 NR2E1Q9Y466 385 aa5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 FRMPD2Q68DX3 1309 aaPredicted RBP5.21□□□□□ -1.58
HMGB1P28-201ENST00000507778 MTSS1O43312 755 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 GYPEP15421 78 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 KCNC1P48547 511 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 DSC2Q02487 901 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 HGFACQ04756 655 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 DUSP2Q05923 314 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 NFYCQ13952 458 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 GRM3Q14832 879 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 GAGE13Q4V321 117 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 THEMIS2Q5TEJ8 643 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 BORAQ6PGQ7 559 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 DRC7Q8IY82 874 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 PQLC1Q8N2U9 271 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 ANKRD53Q8N9V6 530 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 ZBTB34Q8NCN2 500 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 OR7D4Q8NG98 312 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 OR14K1Q8NGZ2 314 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 CYFIP2Q96F07 1278 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 FAM193BQ96PV7 902 aaPredicted RBP5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 UHRF1Q96T88 793 aaPredicted RBP5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 KMT5AQ9NQR1 393 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 MAN1C1Q9NR34 630 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 DDX20Q9UHI6 824 aaKnown RBP5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 PCDHB1Q9Y5F3 818 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 SLC4A7Q9Y6M7 1214 aa5.2□□□□□ -1.58
HMGB1P28-201ENST00000507778 H3BML4 177 aa5.19□□□□□ -1.58
HMGB1P28-201ENST00000507778 NRP1O14786 923 aa5.19□□□□□ -1.58
HMGB1P28-201ENST00000507778 SGTAO43765 313 aa5.19□□□□□ -1.58
HMGB1P28-201ENST00000507778 NOBOXO60393 691 aa5.19□□□□□ -1.58
HMGB1P28-201ENST00000507778 ITGA10O75578 1167 aa5.19□□□□□ -1.58
HMGB1P28-201ENST00000507778 MYL1P05976 194 aa5.19□□□□□ -1.58
HMGB1P28-201ENST00000507778 MYBP10242 640 aa5.19□□□□□ -1.58
HMGB1P28-201ENST00000507778 CRHR1P34998 444 aa5.19□□□□□ -1.58
HMGB1P28-201ENST00000507778 SREBF1P36956 1147 aa5.19□□□□□ -1.58
HMGB1P28-201ENST00000507778 SLC6A9P48067 706 aa5.19□□□□□ -1.58
HMGB1P28-201ENST00000507778 CDC42EP1Q00587 391 aa5.19□□□□□ -1.58
HMGB1P28-201ENST00000507778 ACAP1Q15027 740 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms