RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PIK3CAP42336 1068 aa11.52□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 NT5DC1Q5TFE4 455 aa11.52□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ANKRD42Q8N9B4 389 aa11.52□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 OSBPL1AQ9BXW6 950 aa11.52□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 NOD2Q9HC29 1040 aa11.52□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 TYW1Q9NV66 732 aaKnown RBP11.52□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 NKIRAS1Q9NYS0 192 aa11.52□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SCOCQ9UIL1 159 aa11.52□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 RASAL2Q9UJF2 1139 aa11.52□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SNED1Q8TER0 1413 aa11.52□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SPEF2Q9C093 1822 aa11.52□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 RASSF10A6NK89 507 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 NFKBIEO00221 500 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 EPHA7Q15375 998 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TRIP13Q15645 432 aaPredicted RBP11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ZNF513Q8N8E2 541 aaPredicted RBP11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SLC16A10Q8TF71 515 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TRAPPC12Q8WVT3 735 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ARL8AQ96BM9 186 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ATP6V1G3Q96LB4 118 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 RNPC3Q96LT9 517 aaKnown RBP11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 P2RX7Q99572 595 aaKnown RBP11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 KLHL14Q9P2G3 628 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 COL4A1P02462 1669 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 A0A087X0T9 212 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 GOLGA8SH3BPF8 625 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 KRIT1O00522 736 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SUN1O94901 812 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FAM228BP0C875 321 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 UCHL3P15374 230 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 GAP43P17677 238 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ADCY1Q08828 1119 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MAP7Q14244 749 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SH2D4BQ5SQS7 431 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CBWD2Q8IUF1 395 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SCYL3Q8IZE3 742 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 POLR3FQ9H1D9 316 aaPredicted RBP11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 COL20A1Q9P218 1284 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CAPN6Q9Y6Q1 641 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FAM107AO95990 144 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PSAPP07602 524 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TATDN1Q6P1N9 297 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 OTOP1Q7RTM1 612 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SYT2Q8N9I0 419 aaPredicted RBP11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CYFIP2Q96F07 1278 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 C1orf112Q9NSG2 853 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SLC9A2Q9UBY0 812 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PPP1R9AQ9ULJ8 1098 aa11.52□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SYNJ2BP-COX16A0A087WUM0 186 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CUL3Q13618 768 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DCUN1D2Q6PH85 259 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TAOK1Q7L7X3 1001 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 APOBEC3FQ8IUX4 373 aaKnown RBP11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 XXYLT1Q8NBI6 393 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MYCBPAPQ8TBZ2 947 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ATP6V0A4Q9HBG4 840 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 COX16Q9P0S2 106 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 IRF6O14896 467 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CYP26A1O43174 497 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FSBPO95073 299 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 IFNB1P01574 187 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ZNF131P52739 623 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PSMC5P62195 406 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PRKCEQ02156 737 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PTK2Q05397 1052 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MTM1Q13496 603 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PTGISQ16647 500 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DENND2CQ68D51 928 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CENPPQ6IPU0 288 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MIS18BP1Q6P0N0 1132 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 GMCL1P1Q8NEA9 526 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 WHAMMQ8TF30 809 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 LMBR1Q8WVP7 490 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 P3H4Q92791 437 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FAM118BQ9BPY3 351 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PDCD2LQ9BRP1 358 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MSTO1Q9BUK6 570 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PRM3Q9NNZ6 103 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ARHGAP20Q9P2F6 1191 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PCDHB4Q9Y5E5 795 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 KLRC1P26715 233 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SMARCA1P28370 1054 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ORC1Q13415 861 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FBXO16Q8IX29 292 aaPredicted RBP11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 RNF149Q8NC42 400 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 LPAR1Q92633 364 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ABTB1Q969K4 478 aaPredicted RBP11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ZNF653Q96CK0 615 aa11.51□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 VWA5AO00534 786 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SERPING1P05155 500 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TMEM191BP0C7N4 346 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 LMNB1P20700 586 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PLCB4Q15147 1175 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 LY6KQ17RY6 165 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SPATA33Q96N06 139 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ZIM3Q96PE6 472 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TARS2Q9BW92 718 aaKnown RBP11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ZNF302Q9NR11 478 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TBC1D22BQ9NU19 505 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms