RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 MSL3Q8N5Y2 521 aaKnown RBP6.26□□□□□ -1.41
SCN1A-206ENST00000491429 CAVIN3Q969G5 261 aa6.26□□□□□ -1.41
SCN1A-206ENST00000491429 ZMAT4Q9H898 229 aa6.26□□□□□ -1.41
SCN1A-206ENST00000491429 OXSMQ9NWU1 459 aa6.26□□□□□ -1.41
SCN1A-206ENST00000491429 H2AFY2Q9P0M6 372 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-206ENST00000491429 MYPNQ86TC9 1320 aa6.25□□□□□ -1.41
SCN1A-206ENST00000491429 GAGE12BA1L429 117 aa6.25□□□□□ -1.41
SCN1A-206ENST00000491429 GAGE12HA6NDE8 117 aa6.25□□□□□ -1.41
SCN1A-206ENST00000491429 ZSCAN20P17040 1043 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-206ENST00000491429 AVPR1BP47901 424 aa6.25□□□□□ -1.41
SCN1A-206ENST00000491429 GZMKP49863 264 aa6.25□□□□□ -1.41
SCN1A-206ENST00000491429 NHLH2Q02577 135 aa6.25□□□□□ -1.41
SCN1A-206ENST00000491429 LILRB2Q8N423 598 aa6.25□□□□□ -1.41
SCN1A-206ENST00000491429 CPEB3Q8NE35 698 aaKnown RBP6.25□□□□□ -1.41
SCN1A-206ENST00000491429 FDXACB1Q9BRP7 624 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-206ENST00000491429 INSL6Q9Y581 213 aa6.25□□□□□ -1.41
SCN1A-206ENST00000491429 PCDHB6Q9Y5E3 794 aa6.25□□□□□ -1.41
SCN1A-206ENST00000491429 PRR5-ARHGAP8B1AHC4 643 aa6.24□□□□□ -1.41
SCN1A-206ENST00000491429 DUSP2Q05923 314 aa6.24□□□□□ -1.41
SCN1A-206ENST00000491429 PAPD7Q5XG87 772 aaKnown RBP6.24□□□□□ -1.41
SCN1A-206ENST00000491429 BTNL9Q6UXG8 535 aa6.24□□□□□ -1.41
SCN1A-206ENST00000491429 FAM98AQ8NCA5 519 aaKnown RBP6.24□□□□□ -1.41
SCN1A-206ENST00000491429 SIMC1Q8NDZ2 872 aa6.24□□□□□ -1.41
SCN1A-206ENST00000491429 COQ10AQ96MF6 247 aa6.24□□□□□ -1.41
SCN1A-206ENST00000491429 SPON1Q9HCB6 807 aa6.24□□□□□ -1.41
SCN1A-206ENST00000491429 PIPSLA2A3N6 862 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 JMJD7P0C870 316 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 HKR1P10072 659 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 CDK4P11802 303 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 BMPR1AP36894 532 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 GUCY1B3Q02153 619 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 RBL2Q08999 1139 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 TP53BP2Q13625 1128 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 PDCD4Q53EL6 469 aaKnown RBP6.23□□□□□ -1.41
SCN1A-206ENST00000491429 FNDC3BQ53EP0 1204 aaKnown RBP6.23□□□□□ -1.41
SCN1A-206ENST00000491429 CDCA2Q69YH5 1023 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-206ENST00000491429 TAS1R1Q7RTX1 841 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 PLXDC1Q8IUK5 500 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 CDYL2Q8N8U2 506 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 ADAM2Q99965 735 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 USP18Q9UMW8 372 aa6.23□□□□□ -1.41
SCN1A-206ENST00000491429 COL11A2P13942 1736 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-206ENST00000491429 SEC24DO94855 1032 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-206ENST00000491429 HSP90B1P14625 803 aaKnown RBP6.22□□□□□ -1.41
SCN1A-206ENST00000491429 ATP2A2P16615 1042 aaKnown RBP6.22□□□□□ -1.41
SCN1A-206ENST00000491429 SDSP20132 328 aa6.22□□□□□ -1.41
SCN1A-206ENST00000491429 CXCR5P32302 372 aa6.22□□□□□ -1.41
SCN1A-206ENST00000491429 ZBTB41Q5SVQ8 909 aa6.22□□□□□ -1.41
SCN1A-206ENST00000491429 BOLLQ8N9W6 283 aaKnown RBP6.22□□□□□ -1.41
SCN1A-206ENST00000491429 OR10H5Q8NGA6 315 aa6.22□□□□□ -1.41
SCN1A-206ENST00000491429 ASB10Q8WXI3 467 aa6.22□□□□□ -1.41
SCN1A-206ENST00000491429 USP36Q9P275 1121 aaKnown RBP6.22□□□□□ -1.41
SCN1A-206ENST00000491429 MAP3K2Q9Y2U5 619 aa6.22□□□□□ -1.41
SCN1A-206ENST00000491429 POLR2AP24928 1970 aaKnown RBP6.22□□□□□ -1.41
SCN1A-206ENST00000491429 ERBB2P04626 1255 aa6.21□□□□□ -1.42
SCN1A-206ENST00000491429 PFKMP08237 780 aa6.21□□□□□ -1.42
SCN1A-206ENST00000491429 DDX6P26196 483 aaKnown RBP eCLIP6.21□□□□□ -1.42
SCN1A-206ENST00000491429 ANKS6Q68DC2 871 aa6.21□□□□□ -1.42
SCN1A-206ENST00000491429 ZZZ3Q8IYH5 903 aa6.21□□□□□ -1.42
SCN1A-206ENST00000491429 MKL1Q969V6 931 aa6.21□□□□□ -1.42
SCN1A-206ENST00000491429 C8orf37Q96NL8 207 aa6.21□□□□□ -1.42
SCN1A-206ENST00000491429 ALG13Q9NP73 1137 aaKnown RBP6.21□□□□□ -1.42
SCN1A-206ENST00000491429 ZMYM3Q14202 1370 aa6.2□□□□□ -1.42
SCN1A-206ENST00000491429 A0A1W2PR48 441 aa6.2□□□□□ -1.42
SCN1A-206ENST00000491429 KRTAP29-1A8MX34 341 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-206ENST00000491429 ERCC6LQ2NKX8 1250 aa6.2□□□□□ -1.42
SCN1A-206ENST00000491429 SP5Q6BEB4 398 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-206ENST00000491429 UBE2R2Q712K3 238 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-206ENST00000491429 ZNF496Q96IT1 587 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-206ENST00000491429 LRFN3Q9BTN0 628 aa6.2□□□□□ -1.42
SCN1A-206ENST00000491429 TESQ9UGI8 421 aaKnown RBP6.2□□□□□ -1.42
SCN1A-206ENST00000491429 DIRC3C9JPN6 131 aa6.19□□□□□ -1.42
SCN1A-206ENST00000491429 SPDEFO95238 335 aa6.19□□□□□ -1.42
SCN1A-206ENST00000491429 CD40P25942 277 aa6.19□□□□□ -1.42
SCN1A-206ENST00000491429 FLT3P36888 993 aa6.19□□□□□ -1.42
SCN1A-206ENST00000491429 MGAT5Q09328 741 aa6.19□□□□□ -1.42
SCN1A-206ENST00000491429 CFAP100Q494V2 611 aa6.19□□□□□ -1.42
SCN1A-206ENST00000491429 DRICH1Q6PGQ1 229 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-206ENST00000491429 RNF169Q8NCN4 708 aa6.19□□□□□ -1.42
SCN1A-206ENST00000491429 GAB3Q8WWW8 586 aa6.19□□□□□ -1.42
SCN1A-206ENST00000491429 FERMT2Q96AC1 680 aa6.19□□□□□ -1.42
SCN1A-206ENST00000491429 ARMC5Q96C12 935 aa6.19□□□□□ -1.42
SCN1A-206ENST00000491429 CLCA2Q9UQC9 943 aa6.19□□□□□ -1.42
SCN1A-206ENST00000491429 ST20-MTHFSA0A0A6YYL1 179 aa6.18□□□□□ -1.42
SCN1A-206ENST00000491429 MARCH11A6NNE9 402 aa6.18□□□□□ -1.42
SCN1A-206ENST00000491429 EGR2P11161 476 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-206ENST00000491429 APBA1Q02410 837 aa6.18□□□□□ -1.42
SCN1A-206ENST00000491429 LRRC32Q14392 662 aa6.18□□□□□ -1.42
SCN1A-206ENST00000491429 UBE3CQ15386 1083 aa6.18□□□□□ -1.42
SCN1A-206ENST00000491429 ABHD17BQ5VST6 288 aa6.18□□□□□ -1.42
SCN1A-206ENST00000491429 ESPNLQ6ZVH7 1005 aa6.18□□□□□ -1.42
SCN1A-206ENST00000491429 SLC44A3Q8N4M1 653 aa6.18□□□□□ -1.42
SCN1A-206ENST00000491429 MSRAQ9UJ68 235 aa6.18□□□□□ -1.42
SCN1A-206ENST00000491429 FRMD4BQ9Y2L6 1034 aa6.18□□□□□ -1.42
SCN1A-206ENST00000491429 SALL3Q9BXA9 1300 aa6.18□□□□□ -1.42
SCN1A-206ENST00000491429 ARHGEF17Q96PE2 2063 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-206ENST00000491429 LCHNA4D1U4 455 aa6.17□□□□□ -1.42
SCN1A-206ENST00000491429 ESRRBO95718 433 aa6.17□□□□□ -1.42
SCN1A-206ENST00000491429 MPLP40238 635 aa6.17□□□□□ -1.42
SCN1A-206ENST00000491429 KRTAP10-9P60411 292 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms