RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 STRN3Q13033 797 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 PNOCQ13519 176 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 POSTNQ15063 836 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 LRIT3Q3SXY7 679 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 PAN2Q504Q3 1202 aaKnown RBP12.14□□□□□ -0.47
UBE4B-210ENST00000488228 FAM26FQ5R3K3 315 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 ATF7IP2Q5U623 682 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 ECHDC2Q86YB7 292 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 CRIPAKQ8N1N5 446 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 PHOSPHO2Q8TCD6 241 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 ERCC4Q92889 916 aaPredicted RBP12.14□□□□□ -0.47
UBE4B-210ENST00000488228 TOP1MTQ969P6 601 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 CCDC51Q96ER9 411 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 BICD1Q96G01 975 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 LRCH3Q96II8 777 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 NTPCRQ9BSD7 190 aaKnown RBP12.14□□□□□ -0.47
UBE4B-210ENST00000488228 ZBED2Q9BTP6 218 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 TARS2Q9BW92 718 aaKnown RBP12.14□□□□□ -0.47
UBE4B-210ENST00000488228 APOL6Q9BWW8 343 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 MRPL4Q9BYD3 311 aaKnown RBP12.14□□□□□ -0.47
UBE4B-210ENST00000488228 NXF3Q9H4D5 531 aaKnown RBP12.14□□□□□ -0.47
UBE4B-210ENST00000488228 TMEM134Q9H6X4 195 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 RC3H2Q9HBD1 1191 aaKnown RBP12.14□□□□□ -0.47
UBE4B-210ENST00000488228 RNF19AQ9NV58 838 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 LRFN2Q9ULH4 789 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 TBX20Q9UMR3 447 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 HES2Q9Y543 173 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 PCDHB2Q9Y5E7 798 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 ZMYM2Q9UBW7 1377 aa12.14□□□□□ -0.47
UBE4B-210ENST00000488228 CDH23Q9H251 3354 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 SZT2Q5T011 3432 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 A0A0U1RQF3 1178 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.13□□□□□ -0.47
UBE4B-210ENST00000488228 A0A1B0GUA9 196 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.13□□□□□ -0.47
UBE4B-210ENST00000488228 HNRNPDLO14979 420 aaKnown RBP12.13□□□□□ -0.47
UBE4B-210ENST00000488228 N4BP3O15049 544 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 CA3P07451 260 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 DNAJB2P25686 324 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 NCBP1Q09161 790 aaKnown RBP12.13□□□□□ -0.47
UBE4B-210ENST00000488228 KCNA1Q09470 495 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 ZNF568Q3ZCX4 644 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 KMT5BQ4FZB7 885 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 CLLU1OSQ5K130 101 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 SLC27A1Q6PCB7 646 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 SPRED2Q7Z698 418 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 ZBTB33Q86T24 672 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 ZNF598Q86UK7 904 aaKnown RBP12.13□□□□□ -0.47
UBE4B-210ENST00000488228 MAP4K3Q8IVH8 894 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 SMG8Q8ND04 991 aaKnown RBP12.13□□□□□ -0.47
UBE4B-210ENST00000488228 YME1L1Q96TA2 773 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 ACO2Q99798 780 aaKnown RBP12.13□□□□□ -0.47
UBE4B-210ENST00000488228 TRIM6Q9C030 488 aaPredicted RBP12.13□□□□□ -0.47
UBE4B-210ENST00000488228 CDT1Q9H211 546 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 NKX2-4Q9H2Z4 354 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 LMBRD1Q9NUN5 540 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 EXOC1Q9NV70 894 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 TMEM161AQ9NX61 479 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 HCSTQ9UBK5 93 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 IPPQ9Y573 584 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 TRANK1O15050 2925 aa12.13□□□□□ -0.47
UBE4B-210ENST00000488228 ABLIM1O14639 778 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 DGKIO75912 1065 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 PRPF6O94906 941 aaKnown RBP12.12□□□□□ -0.47
UBE4B-210ENST00000488228 RPN1P04843 607 aaKnown RBP12.12□□□□□ -0.47
UBE4B-210ENST00000488228 STAG3L1P0CL83 205 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 LIG4P49917 911 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 FAM189BP81408 668 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 HTRA4P83105 476 aaPredicted RBP12.12□□□□□ -0.47
UBE4B-210ENST00000488228 SMAD3P84022 425 aaKnown RBP12.12□□□□□ -0.47
UBE4B-210ENST00000488228 GTF2BQ00403 316 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 RAB30Q15771 203 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 SLC39A4Q6P5W5 647 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 ZNF720Q7Z2F6 126 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 CEP120Q8N960 986 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 KIAA0895Q8NCT3 520 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 SLC17A8Q8NDX2 589 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 HELQQ8TDG4 1101 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 KCNN1Q92952 543 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 ZBTB45Q96K62 511 aaPredicted RBP12.12□□□□□ -0.47
UBE4B-210ENST00000488228 TRAIPQ9BWF2 469 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 STRA6Q9BX79 667 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 RNF39Q9H2S5 420 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 ST6GALNAC4Q9H4F1 302 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 SLC39A2Q9NP94 309 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 KCNG1Q9UIX4 513 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 TNFSF13BQ9Y275 285 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 PCDHB7Q9Y5E2 793 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 PCDHA11Q9Y5I1 949 aa12.12□□□□□ -0.47
UBE4B-210ENST00000488228 PVALEFA0A1B0GWK0 134 aa12.11□□□□□ -0.47
UBE4B-210ENST00000488228 TBKBP1A7MCY6 615 aa12.11□□□□□ -0.47
UBE4B-210ENST00000488228 ANKRD63C9JTQ0 380 aa12.11□□□□□ -0.47
UBE4B-210ENST00000488228 MYL1P05976 194 aa12.11□□□□□ -0.47
UBE4B-210ENST00000488228 PROZP22891 400 aa12.11□□□□□ -0.47
UBE4B-210ENST00000488228 MATR3P43243 847 aaKnown RBP eCLIP12.11□□□□□ -0.47
UBE4B-210ENST00000488228 NOLC1Q14978 699 aaKnown RBP eCLIP12.11□□□□□ -0.47
UBE4B-210ENST00000488228 DCAF4L1Q3SXM0 396 aa12.11□□□□□ -0.47
UBE4B-210ENST00000488228 L1TD1Q5T7N2 865 aaKnown RBP12.11□□□□□ -0.47
UBE4B-210ENST00000488228 KANK3Q6NY19 840 aa12.11□□□□□ -0.47
UBE4B-210ENST00000488228 MPZL3Q6UWV2 235 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms