RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	ADAL	Q6DHV7	355 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	TAS1R3	Q7RTX0	852 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	ZNF598	Q86UK7	904 aa	Known RBP	11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	ABI1	Q8IZP0	508 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	FIBCD1	Q8N539	461 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	IQUB	Q8NA54	791 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	TMEM161B	Q8NDZ6	487 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	HELQ	Q8TDG4	1101 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	SPIRE2	Q8WWL2	714 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	ZNF689	Q96CS4	500 aa	Predicted RBP	11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	PRIMPOL	Q96LW4	560 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	TRAIP	Q9BWF2	469 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	APOL6	Q9BWW8	343 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	ELAC1	Q9H777	363 aa	Known RBP	11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	C17orf75	Q9HAS0	396 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	PARVG	Q9HBI0	331 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	MTMR10	Q9NXD2	777 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	CHMP5	Q9NZZ3	219 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	LARS	Q9P2J5	1176 aa	Known RBP	11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	HES2	Q9Y543	173 aa		11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095	MRPL42	Q9Y6G3	142 aa	Known RBP	11.31	□□□□□ -0.6
HDAC6-222	ENST00000478095		A0A1B0GUA9	196 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	ACKR2	O00590	384 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	TRAK2	O60296	914 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	MAPT	P10636	758 aa	Known RBP	11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	CMA1	P23946	247 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	CASP1	P29466	404 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	NMT1	P30419	496 aa	Known RBP	11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	RAB27A	P51159	221 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	ZNF131	P52739	623 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	SMTN	P53814	917 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	NCKAP1L	P55160	1127 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	NT5DC1	Q5TFE4	455 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	EEF1DP3	Q658K8	133 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	SLC27A1	Q6PCB7	646 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	FAM43B	Q6ZT52	329 aa	Predicted RBP	11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	SFR1	Q86XK3	245 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	GRAMD1C	Q8IYS0	662 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	CMTR2	Q8IYT2	770 aa	Known RBP	11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	FSIP1	Q8NA03	581 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	SMG8	Q8ND04	991 aa	Known RBP	11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	MYLIP	Q8WY64	445 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	DNAJC19	Q96DA6	116 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	CCDC51	Q96ER9	411 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	TGS1	Q96RS0	853 aa	Known RBP	11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	CDX2	Q99626	313 aa	Predicted RBP	11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	TARS2	Q9BW92	718 aa	Known RBP	11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	TRIM6	Q9C030	488 aa	Predicted RBP	11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	TNMD	Q9H2S6	317 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	CUEDC2	Q9H467	287 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	GOLPH3L	Q9H4A5	285 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	NXF3	Q9H4D5	531 aa	Known RBP	11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	PDZD7	Q9H5P4	517 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	TBC1D7	Q9P0N9	293 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	SERTAD1	Q9UHV2	236 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	INPP5F	Q9Y2H2	1132 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	IPP	Q9Y573	584 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	MICAL3	Q7RTP6	2002 aa		11.3	□□□□□ -0.6
HDAC6-222	ENST00000478095	N4BP3	O15049	544 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	HOXA2	O43364	376 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	EOMES	O95936	686 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	LINC00271	P0C7V0	271 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	HARS	P12081	509 aa	Known RBP	11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	SKI	P12755	728 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	AKAP5	P24588	427 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	CTNNB1	P35222	781 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	AFM	P43652	599 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	NDUFA8	P51970	172 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	ERVK-21	P61565	698 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	ASIC1	P78348	528 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	STRN3	Q13033	797 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	SPOUT1	Q5T280	376 aa	Known RBP	11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	ATF7IP2	Q5U623	682 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	AGMO	Q6ZNB7	445 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	HAUS6	Q7Z4H7	955 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	FAM178B	Q8IXR5	827 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	CEP57L1	Q8IYX8	460 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	GDPD5	Q8WTR4	605 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	MRPS27	Q92552	414 aa	Known RBP	11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	CASD1	Q96PB1	797 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	FIZ1	Q96SL8	496 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	NTPCR	Q9BSD7	190 aa	Known RBP	11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	MRPL4	Q9BYD3	311 aa	Known RBP	11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	TRIM9	Q9C026	710 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	TMEM117	Q9H0C3	514 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	BLZF1	Q9H2G9	400 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	TMEM134	Q9H6X4	195 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	KBTBD4	Q9NVX7	518 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	HPSE	Q9Y251	543 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	COL4A6	Q14031	1691 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095	MYH15	Q9Y2K3	1946 aa		11.29	□□□□□ -0.6
HDAC6-222	ENST00000478095		A0A1W2PQ27	194 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095		A0A1W2PQ64	194 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095		A0A1W2PQD8	194 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	C2orf72	A6NCS6	295 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	ACTN4	O43707	911 aa	Known RBP	11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	ZNF623	O75123	536 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	CSPG5	O95196	566 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	ITGA4	P13612	1032 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	PBX3	P40426	434 aa		11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms