RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 GPC5P78333 572 aa20.64■□□□□ 0.89
SHH-205ENST00000472308 DSC1Q08554 894 aa20.64■□□□□ 0.89
SHH-205ENST00000472308 VARS2Q5ST30 1063 aaKnown RBP20.64■□□□□ 0.89
SHH-205ENST00000472308 ANO5Q75V66 913 aa20.64■□□□□ 0.89
SHH-205ENST00000472308 PALB2Q86YC2 1186 aa20.64■□□□□ 0.89
SHH-205ENST00000472308 RDM1Q8NG50 284 aa20.64■□□□□ 0.89
SHH-205ENST00000472308 FGF14Q92915 247 aa20.64■□□□□ 0.89
SHH-205ENST00000472308 B3GALT6Q96L58 329 aa20.64■□□□□ 0.89
SHH-205ENST00000472308 DDX23Q9BUQ8 820 aaKnown RBP20.64■□□□□ 0.89
SHH-205ENST00000472308 PIDD1Q9HB75 910 aa20.64■□□□□ 0.89
SHH-205ENST00000472308 CHST7Q9NS84 486 aa20.64■□□□□ 0.89
SHH-205ENST00000472308 ZDHHC7Q9NXF8 308 aa20.64■□□□□ 0.89
SHH-205ENST00000472308 MAP1BP46821 2468 aaKnown RBP20.63■□□□□ 0.89
SHH-205ENST00000472308 SPTLC1O15269 473 aa20.63■□□□□ 0.89
SHH-205ENST00000472308 NCLP19338 710 aaKnown RBP20.63■□□□□ 0.89
SHH-205ENST00000472308 OR1G1P47890 313 aa20.63■□□□□ 0.89
SHH-205ENST00000472308 RCAN1P53805 252 aa20.63■□□□□ 0.89
SHH-205ENST00000472308 PLA2G4FQ68DD2 849 aa20.63■□□□□ 0.89
SHH-205ENST00000472308 LILRA6Q6PI73 481 aa20.63■□□□□ 0.89
SHH-205ENST00000472308 PARM1Q6UWI2 310 aa20.63■□□□□ 0.89
SHH-205ENST00000472308 MIER3Q7Z3K6 550 aa20.63■□□□□ 0.89
SHH-205ENST00000472308 SMG8Q8ND04 991 aaKnown RBP20.63■□□□□ 0.89
SHH-205ENST00000472308 PRKD2Q9BZL6 878 aa20.63■□□□□ 0.89
SHH-205ENST00000472308 PLEKHA4Q9H4M7 779 aa20.63■□□□□ 0.89
SHH-205ENST00000472308 NCDNQ9UBB6 729 aa20.63■□□□□ 0.89
SHH-205ENST00000472308 FBXO4Q9UKT5 387 aa20.63■□□□□ 0.89
SHH-205ENST00000472308 MTF2Q9Y483 593 aaPredicted RBP20.63■□□□□ 0.89
SHH-205ENST00000472308 CHD6Q8TD26 2715 aa20.62■□□□□ 0.89
SHH-205ENST00000472308 GNA11P29992 359 aa20.62■□□□□ 0.89
SHH-205ENST00000472308 SNW1Q13573 536 aaKnown RBP20.62■□□□□ 0.89
SHH-205ENST00000472308 ADCK5Q3MIX3 580 aa20.62■□□□□ 0.89
SHH-205ENST00000472308 DHX32Q7L7V1 743 aaKnown RBP20.62■□□□□ 0.89
SHH-205ENST00000472308 CCDC12Q8WUD4 166 aaPredicted RBP20.62■□□□□ 0.89
SHH-205ENST00000472308 ANO2Q9NQ90 1003 aa20.62■□□□□ 0.89
SHH-205ENST00000472308 SPATA6Q9NWH7 488 aaPredicted RBP20.62■□□□□ 0.89
SHH-205ENST00000472308 COL4A3BPQ9Y5P4 624 aa20.62■□□□□ 0.89
SHH-205ENST00000472308 MIA3Q5JRA6 1907 aa20.62■□□□□ 0.89
SHH-205ENST00000472308 USP24Q9UPU5 2620 aa20.62■□□□□ 0.89
SHH-205ENST00000472308 MYH15Q9Y2K3 1946 aa20.61■□□□□ 0.89
SHH-205ENST00000472308 KANSL1LA0AUZ9 987 aa20.61■□□□□ 0.89
SHH-205ENST00000472308 DDX11L8A8MPP1 907 aa20.61■□□□□ 0.89
SHH-205ENST00000472308 GAS2O43903 313 aaKnown RBP20.61■□□□□ 0.89
SHH-205ENST00000472308 C1RP00736 705 aa20.61■□□□□ 0.89
SHH-205ENST00000472308 PHKBQ93100 1093 aa20.61■□□□□ 0.89
SHH-205ENST00000472308 SHDQ96IW2 340 aa20.61■□□□□ 0.89
SHH-205ENST00000472308 RNF39Q9H2S5 420 aa20.61■□□□□ 0.89
SHH-205ENST00000472308 MIOSQ9NXC5 875 aa20.61■□□□□ 0.89
SHH-205ENST00000472308 PCDHGA2Q9Y5H1 932 aa20.61■□□□□ 0.89
SHH-205ENST00000472308 ARL5CA6NH57 179 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 LAMTOR5O43504 91 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 TGM1P22735 817 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 MLH1P40692 756 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 USP11P51784 963 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 GLYCTKQ8IVS8 523 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 RASEFQ8IZ41 740 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 ZNF579Q8NAF0 562 aaKnown RBP20.6■□□□□ 0.89
SHH-205ENST00000472308 ZBTB44Q8NCP5 570 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 NELL1Q92832 810 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 ZFP42Q96MM3 310 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 GAD1Q99259 594 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 BCO2Q9BYV7 579 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 GPR62Q9BZJ7 368 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 SMG5Q9UPR3 1016 aaKnown RBP20.6■□□□□ 0.89
SHH-205ENST00000472308 IPPQ9Y573 584 aa20.6■□□□□ 0.89
SHH-205ENST00000472308 MTCL1Q9Y4B5 1905 aaKnown RBP20.6■□□□□ 0.89
SHH-205ENST00000472308 PRPF3O43395 683 aaKnown RBP20.59■□□□□ 0.89
SHH-205ENST00000472308 ZMYND10O75800 440 aa20.59■□□□□ 0.89
SHH-205ENST00000472308 RPL17P18621 184 aaKnown RBP20.59■□□□□ 0.89
SHH-205ENST00000472308 FSHRP23945 695 aa20.59■□□□□ 0.89
SHH-205ENST00000472308 SCNN1GP51170 649 aa20.59■□□□□ 0.89
SHH-205ENST00000472308 NPEPPSP55786 919 aa20.59■□□□□ 0.89
SHH-205ENST00000472308 CSTF1Q05048 431 aaKnown RBP20.59■□□□□ 0.89
SHH-205ENST00000472308 MLF2Q15773 248 aaPredicted RBP20.59■□□□□ 0.89
SHH-205ENST00000472308 Q4G0T1 1027 aa20.59■□□□□ 0.89
SHH-205ENST00000472308 SRGAP1Q7Z6B7 1085 aa20.59■□□□□ 0.89
SHH-205ENST00000472308 PRPF31Q8WWY3 499 aaKnown RBP20.59■□□□□ 0.89
SHH-205ENST00000472308 MBOAT7Q96N66 472 aa20.59■□□□□ 0.89
SHH-205ENST00000472308 EIF2AQ9BY44 585 aaKnown RBP20.59■□□□□ 0.89
SHH-205ENST00000472308 EPC1Q9H2F5 836 aa20.59■□□□□ 0.89
SHH-205ENST00000472308 FNIP2Q9P278 1114 aa20.59■□□□□ 0.89
SHH-205ENST00000472308 CDH7Q9ULB5 785 aa20.59■□□□□ 0.89
SHH-205ENST00000472308 HES2Q9Y543 173 aa20.59■□□□□ 0.89
SHH-205ENST00000472308 ZFP37Q9Y6Q3 630 aaPredicted RBP20.59■□□□□ 0.89
SHH-205ENST00000472308 NID2Q14112 1375 aa20.59■□□□□ 0.89
SHH-205ENST00000472308 DOCK6Q96HP0 2047 aa20.58■□□□□ 0.89
SHH-205ENST00000472308 LILRB5O75023 590 aa20.58■□□□□ 0.89
SHH-205ENST00000472308 TDP2O95551 362 aa20.58■□□□□ 0.89
SHH-205ENST00000472308 SRGAP2CP0DJJ0 459 aa20.58■□□□□ 0.89
SHH-205ENST00000472308 ITGA4P13612 1032 aa20.58■□□□□ 0.89
SHH-205ENST00000472308 SDHBP21912 280 aa20.58■□□□□ 0.89
SHH-205ENST00000472308 NTHL1P78549 312 aa20.58■□□□□ 0.89
SHH-205ENST00000472308 GRASPQ7Z6J2 395 aaPredicted RBP20.58■□□□□ 0.89
SHH-205ENST00000472308 GPR161Q8N6U8 529 aaKnown RBP20.58■□□□□ 0.89
SHH-205ENST00000472308 ETNPPLQ8TBG4 499 aa20.58■□□□□ 0.89
SHH-205ENST00000472308 BICD2Q8TD16 824 aa20.58■□□□□ 0.89
SHH-205ENST00000472308 BORCS6Q96GS4 357 aa20.58■□□□□ 0.89
SHH-205ENST00000472308 JPH2Q9BR39 696 aaPredicted RBP20.58■□□□□ 0.89
SHH-205ENST00000472308 UBN1Q9NPG3 1134 aa20.58■□□□□ 0.89
SHH-205ENST00000472308 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.58■□□□□ 0.89
SHH-205ENST00000472308 NAP1L2Q9ULW6 460 aaPredicted RBP20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms