RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 ENOSF1Q7L5Y1 443 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 SPATA4Q8NEY3 305 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 RILPQ96NA2 401 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 ERGIC2Q96RQ1 377 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 NOVA2Q9UNW9 492 aaKnown RBP13.14□□□□□ -0.31
TCOF1-205ENST00000439160 CALB1P05937 261 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 CASP4P49662 377 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 MXD4Q14582 209 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-205ENST00000439160 DNAAF3Q8N9W5 541 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 SCFD2Q8WU76 684 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 SEMA6BQ9H3T3 888 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 MED1Q15648 1581 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-205ENST00000439160 ANKRD65E5RJM6 399 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 LPXNO60711 386 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 CCT5P48643 541 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 XRRA1Q6P2D8 792 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 GPRC5AQ8NFJ5 357 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 SYTL5Q8TDW5 730 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-205ENST00000439160 GPRASP2Q96D09 838 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 PI4K2AQ9BTU6 479 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 SNX12Q9UMY4 172 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 EIF3DO15371 548 aaKnown RBP eCLIP13.13□□□□□ -0.31
TCOF1-205ENST00000439160 ZBED1O96006 694 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 C6orf222P0C671 652 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-205ENST00000439160 PDE1BQ01064 536 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 CUL1Q13616 776 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 GIT2Q14161 759 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 C15orf52Q6ZUT6 534 aaKnown RBP13.13□□□□□ -0.31
TCOF1-205ENST00000439160 RAB3IL1Q8TBN0 382 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 ANKEF1Q9NU02 776 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 FAM86B1E9PN63 330 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 GIPC1O14908 333 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 TJP3O95049 919 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 FAM86B2P0C5J1 330 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 SCP2P22307 547 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 NCOA4Q13772 614 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 SLMAPQ14BN4 828 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 ZKSCAN8Q15776 578 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-205ENST00000439160 ARHGEF18Q6ZSZ5 1173 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 MS4A14Q96JA4 679 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 PDCD2LQ9BRP1 358 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 TTC7AQ9ULT0 858 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-205ENST00000439160 HEY1Q9Y5J3 304 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 RASGRF2O14827 1237 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 TADA3O75528 432 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 OATP04181 439 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 TCF7P36402 384 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-205ENST00000439160 ARHGAP25P42331 645 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 PMS1P54277 932 aaKnown RBP13.13□□□□□ -0.31
TCOF1-205ENST00000439160 TMED2Q15363 201 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 SMC1BQ8NDV3 1235 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 CCT6BQ92526 530 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.13□□□□□ -0.317e-7■□□□□ 9.5
TCOF1-205ENST00000439160 GOLPH3Q9H4A6 298 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 GINM1Q9NU53 330 aa13.13□□□□□ -0.31
TCOF1-205ENST00000439160 PIN4Q9Y237 131 aaKnown RBP13.13□□□□□ -0.31
TCOF1-205ENST00000439160 NOC2LQ9Y3T9 749 aaKnown RBP13.13□□□□□ -0.31
TCOF1-205ENST00000439160 A8MXQ7 604 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 CRY2Q49AN0 593 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 EPC2Q52LR7 807 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 GLE1Q53GS7 698 aaKnown RBP13.12□□□□□ -0.31
TCOF1-205ENST00000439160 KLHL14Q9P2G3 628 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 AGAP1Q9UPQ3 857 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 GRIN3BO60391 1043 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 GH1P01241 217 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 SEZ6Q53EL9 994 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 KLHDC7AQ5VTJ3 777 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 CPA5Q8WXQ8 436 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 ACAP3Q96P50 834 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 MKNK1Q9BUB5 465 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 HAUS2Q9NVX0 235 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 AMACRQ9UHK6 382 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 STRIP2Q9ULQ0 834 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 PODXLO00592 558 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 CELF2O95319 508 aaKnown RBP13.12□□□□□ -0.31
TCOF1-205ENST00000439160 TROVE2P10155 538 aaKnown RBP eCLIP13.12□□□□□ -0.31
TCOF1-205ENST00000439160 CENPPQ6IPU0 288 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 VPS52Q8N1B4 723 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 RNF139Q8WU17 664 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 CDKL2Q92772 493 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 ARHGEF2Q92974 986 aaKnown RBP13.12□□□□□ -0.31
TCOF1-205ENST00000439160 MCUR1Q96AQ8 359 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 RBM41Q96IZ5 413 aaKnown RBP13.12□□□□□ -0.31
TCOF1-205ENST00000439160 ADARB2Q9NS39 739 aaKnown RBP13.12□□□□□ -0.31
TCOF1-205ENST00000439160 SMARCAL1Q9NZC9 954 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 CHORDC1Q9UHD1 332 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-205ENST00000439160 IGSF9BQ9UPX0 1349 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 CPP00450 1065 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 FAM102AQ5T9C2 384 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-205ENST00000439160 EFCAB12Q6NXP0 572 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 CCDC62Q6P9F0 684 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 ERO1BQ86YB8 467 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 PDIK1LQ8N165 341 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 SLC35G2Q8TBE7 412 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 SCFD1Q8WVM8 642 aa13.12□□□□□ -0.31
TCOF1-205ENST00000439160 PARK7Q99497 189 aaKnown RBP13.12□□□□□ -0.31
TCOF1-205ENST00000439160 EXOC1LA0A1B0GW35 172 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 PIK3R2O00459 728 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 CTSHP09668 335 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 KLRC1P26715 233 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms