RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PHLPP2Q6ZVD8 1323 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 CCDC78A2IDD5 438 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 ANKRD20A4Q4UJ75 823 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 ANKRD20A8PQ5CZ79 823 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 ANKRD20A2Q5SQ80 823 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 ANKRD20A1Q5TYW2 823 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 CDC42EP5Q6NZY7 148 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 SNX24Q9Y343 169 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 ABCA8O94911 1581 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 GH1P01241 217 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 STMN1P16949 149 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 MAGEB5Q9BZ81 275 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 NFU1Q9UMS0 254 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 FTLP02792 175 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-201ENST00000359947 SREBF2Q12772 1141 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 HAUS6Q7Z4H7 955 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 ZNF507Q8TCN5 953 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 TMPRSS15P98073 1019 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 PPP1R18Q6NYC8 613 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 KCNV1Q6PIU1 500 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 PIP4K2CQ8TBX8 421 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 NR1H4Q96RI1 486 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-201ENST00000359947 FBXL5Q9UKA1 691 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 FLT1P17948 1338 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 NUMBP49757 651 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 VPS72Q15906 364 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 ADCK2Q7Z695 626 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 GPRC5AQ8NFJ5 357 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 DRC3Q9H069 523 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 DEFB129Q9H1M3 183 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 COPEO14579 308 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 ATN1P54259 1190 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-201ENST00000359947 VSTM4Q8IW00 320 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 LRRC71Q8N4P6 559 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 ZCWPW1Q9H0M4 648 aa16.55■□□□□ 0.24
PTPRF-201ENST00000359947 OCM2P0CE71 109 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 OCMP0CE72 109 aaPredicted RBP16.54■□□□□ 0.24
PTPRF-201ENST00000359947 CDC25BP30305 580 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 ARL4CP56559 192 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 CDK17Q00537 523 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 HPS3Q969F9 1004 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 NBPF26B4DH59 902 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 CEP55Q53EZ4 464 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 NAALADL2Q58DX5 795 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 NBPF10Q6P3W6 841 aaKnown RBP16.54■□□□□ 0.24
PTPRF-201ENST00000359947 NBPF15Q8N660 670 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 TEKT4Q8WW24 435 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 ZKSCAN4Q969J2 545 aaPredicted RBP16.54■□□□□ 0.24
PTPRF-201ENST00000359947 DCUN1D1Q96GG9 259 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 NUDT12Q9BQG2 462 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 PAN2Q504Q3 1202 aaKnown RBP16.54■□□□□ 0.24
PTPRF-201ENST00000359947 USP33Q8TEY7 942 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 AGAP3Q96P47 875 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 ISCA1Q9BUE6 129 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 CDH6P55285 790 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 KRT39Q6A163 491 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 AGR3Q8TD06 166 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 PGBD4Q96DM1 585 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 SLC13A1Q9BZW2 595 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 SMARCAD1Q9H4L7 1026 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 TFDP2Q14188 446 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 SCG3Q8WXD2 468 aaKnown RBP16.54■□□□□ 0.24
PTPRF-201ENST00000359947 NSUN4Q96CB9 384 aaKnown RBP16.54■□□□□ 0.24
PTPRF-201ENST00000359947 CEP72Q9P209 647 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 LSM7Q9UK45 103 aaKnown RBP16.54■□□□□ 0.24
PTPRF-201ENST00000359947 PPP1R9AQ9ULJ8 1098 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 A0A0G2JND7 137 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 CETPP11597 493 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 PLA2G4FQ68DD2 849 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 NEK9Q8TD19 979 aa16.54■□□□□ 0.24
PTPRF-201ENST00000359947 FRMD3A2A2Y4 597 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 TMCC1O94876 653 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 GPS1Q13098 491 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 IL31Q6EBC2 164 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 TNIP3Q96KP6 325 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 NCAPD2Q15021 1401 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 ITGA4P13612 1032 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 BCAR1P56945 870 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 CRLF3Q8IUI8 442 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 PPP1R36Q96LQ0 422 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 PACSIN2Q9UNF0 486 aaPredicted RBP16.53■□□□□ 0.24
PTPRF-201ENST00000359947 SH3BP1Q9Y3L3 701 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 NDUFB10O96000 172 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 ATP6V1E1P36543 226 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 PPM1NQ8N819 430 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 TPX2Q9ULW0 747 aaKnown RBP16.53■□□□□ 0.24
PTPRF-201ENST00000359947 IFNA8P32881 189 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 ROR1Q01973 937 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 CRAMP1Q96RY5 1269 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 SRPK1Q96SB4 655 aaKnown RBP16.53■□□□□ 0.24
PTPRF-201ENST00000359947 PLEKHA5Q9HAU0 1116 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 SMARCA1P28370 1054 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 COPS2P61201 443 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 ARHGAP31Q2M1Z3 1444 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 PID1Q7Z2X4 250 aa16.53■□□□□ 0.24
PTPRF-201ENST00000359947 RSPH10B2B2RC85 870 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 CAPN15O75808 1086 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 RSPH10BP0C881 870 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 HSPA8P11142 646 aaKnown RBP16.52■□□□□ 0.24
PTPRF-201ENST00000359947 OTULINQ96BN8 352 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms