RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 USP17L17D6RBQ6 530 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 USP17L19D6RCP7 530 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 USP17L20D6RJB6 530 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TUFMP49411 452 aaKnown RBP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 SKP1P63208 163 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 USP17L24Q0WX57 530 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 CSTF3Q12996 717 aaKnown RBP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 GRAPQ13588 217 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TUBA3CQ13748 450 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TAF1BQ53T94 588 aaPredicted RBP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 FAM117BQ6P1L5 589 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TBC1D19Q8N5T2 526 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 ARMC2Q8NEN0 867 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 GRAPLQ8TC17 118 aaPredicted RBP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 CNBD2Q96M20 576 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 PRPF18Q99633 342 aaKnown RBP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 C1QTNF1Q9BXJ1 281 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 PIGUQ9H490 435 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 F6X3S4 739 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 CYTH3O43739 400 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 CREB3O43889 395 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 ADCY3O60266 1144 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 ZNF135P52742 658 aaPredicted RBP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 AP3M2P53677 418 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 NCKAP1LP55160 1127 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 CREMQ03060 361 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 ASIC2Q16515 512 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 KRT24Q2M2I5 525 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 HHATQ5VTY9 493 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 SV2BQ7L1I2 683 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 RIPOR3Q96MK2 946 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 FOPNLQ96NB1 174 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 QKIQ96PU8 341 aaKnown RBP eCLIP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 ABCG4Q9H172 646 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 NSMCE4AQ9NXX6 385 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 ZFATQ9P243 1243 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 A0A0B4J269 797 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 A0A1W2PQ27 194 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 A0A1W2PQ64 194 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 A0A1W2PQD8 194 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 H3BQF6 201 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 DIAPH2O60879 1101 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 NPM3O75607 178 aaKnown RBP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 CLNS1AP54105 237 aaKnown RBP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 ICA1Q05084 483 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 WASHC5Q12768 1159 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 NR5A1Q13285 461 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TUBB3Q13509 450 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 PCBP1Q15365 356 aaKnown RBP eCLIP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 MTFR1Q15390 333 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 ELF2Q15723 593 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 PKN1Q16512 942 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TMCO4Q5TGY1 634 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TRIM72Q6ZMU5 477 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 SP8Q8IXZ3 490 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 CENPSQ8N2Z9 138 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 SNX29Q8TEQ0 813 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TSPAN18Q96SJ8 248 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TIPINQ9BVW5 301 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 PKD2L1Q9P0L9 805 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 SPATA31A1Q5TZJ5 1347 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 PLSCR1O15162 318 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 XRCC5P13010 732 aaKnown RBP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 BRAFP15056 766 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 U2AF2P26368 475 aaKnown RBP eCLIP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 CLCN2P51788 898 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 ARPP19P56211 112 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 ETF1P62495 437 aaKnown RBP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TP53BP2Q13625 1128 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 RASA3Q14644 834 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TAB1Q15750 504 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 GEN1Q17RS7 908 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 CROCCP3Q8IVE0 287 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 PM20D2Q8IYS1 436 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TRIML2Q8N7C3 387 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 OR8K1Q8NGG5 319 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 CEP70Q8NHQ1 597 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 PANK2Q9BZ23 570 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TRIM39Q9HCM9 518 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 STX18Q9P2W9 335 aaKnown RBP3.49□□□□□ -1.85
CSMD3-202ENST00000339701 STRIP2Q9ULQ0 834 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 HPCAL4Q9UM19 191 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 NCKAP1Q9Y2A7 1128 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 LOC285556D6RIA3 1793 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 PRAMEF22A3QJZ6 481 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 ZNF197O14709 1029 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 A1BGP04217 495 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 POLR2MP0CAP2 368 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 ZBED6P86452 979 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TMTC3Q6ZXV5 915 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 FAM160B2Q86V87 743 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 TSPYL6Q8N831 410 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 RNF139Q8WU17 664 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 LPIN2Q92539 896 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 CCDC126Q96EE4 140 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 FBXL5Q9UKA1 691 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 AMFRQ9UKV5 643 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 NHSQ6T4R5 1651 aa3.49□□□□□ -1.85
CSMD3-202ENST00000339701 UBN2Q6ZU65 1347 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms