RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W MRPL35Q06678 367 aa5.35□□□□□ -1.55
ATG4YNL223W RTN2Q12443 393 aa5.35□□□□□ -1.55
ATG4YNL223W YPR1Q12458 312 aa5.35□□□□□ -1.55
ATG4YNL223W YLR099W-AQ3E798 87 aa5.35□□□□□ -1.55
ATG4YNL223W QCR7P00128 127 aa5.34□□□□□ -1.55
ATG4YNL223W BOS1P25385 244 aa5.34□□□□□ -1.55
ATG4YNL223W DOA4P32571 926 aa5.34□□□□□ -1.55
ATG4YNL223W VPS17P32913 551 aa5.34□□□□□ -1.55
ATG4YNL223W HIS7P33734 552 aaKnown RBP5.34□□□□□ -1.55
ATG4YNL223W SEF1P34228 1148 aa5.34□□□□□ -1.55
ATG4YNL223W CCZ1P38273 704 aa5.34□□□□□ -1.55
ATG4YNL223W YBR137WP38276 179 aa5.34□□□□□ -1.55
ATG4YNL223W UBS1P38290 277 aa5.34□□□□□ -1.55
ATG4YNL223W PTH1P38876 190 aaKnown RBP5.34□□□□□ -1.55
ATG4YNL223W PMT6P42934 759 aa5.34□□□□□ -1.55
ATG4YNL223W IRC6P43615 237 aa5.34□□□□□ -1.55
ATG4YNL223W PMT3P47190 753 aa5.34□□□□□ -1.55
ATG4YNL223W OCA1P50946 238 aaPredicted RBP5.34□□□□□ -1.55
ATG4YNL223W PMT5P52867 743 aa5.34□□□□□ -1.55
ATG4YNL223W ARO8P53090 500 aaKnown RBP5.34□□□□□ -1.55
ATG4YNL223W SAY1P53324 424 aa5.34□□□□□ -1.55
ATG4YNL223W PEX25Q02969 394 aa5.34□□□□□ -1.55
ATG4YNL223W TDA1Q03533 586 aa5.34□□□□□ -1.55
ATG4YNL223W SNX41Q04053 625 aa5.34□□□□□ -1.55
ATG4YNL223W BUR2Q05949 395 aa5.34□□□□□ -1.55
ATG4YNL223W AIM6Q07716 390 aa5.34□□□□□ -1.55
ATG4YNL223W YOR376WQ08900 122 aa5.34□□□□□ -1.55
ATG4YNL223W AKR2Q12013 749 aa5.34□□□□□ -1.55
ATG4YNL223W YRA1Q12159 226 aaKnown RBP5.34□□□□□ -1.55
ATG4YNL223W YOR343CQ12484 108 aa5.34□□□□□ -1.55
ATG4YNL223W SFG1Q12507 346 aa5.34□□□□□ -1.55
ATG4YNL223W YPT1P01123 206 aaKnown RBP5.33□□□□□ -1.56
ATG4YNL223W PDE2P06776 526 aa5.33□□□□□ -1.56
ATG4YNL223W COX9P07255 59 aa5.33□□□□□ -1.56
ATG4YNL223W MRP1P10662 321 aaKnown RBP5.33□□□□□ -1.56
ATG4YNL223W CAP2P13517 287 aa5.33□□□□□ -1.56
ATG4YNL223W STE4P18851 423 aa5.33□□□□□ -1.56
ATG4YNL223W AIM17P23180 465 aaKnown RBP5.33□□□□□ -1.56
ATG4YNL223W SCO1P23833 295 aa5.33□□□□□ -1.56
ATG4YNL223W BUD23P25627 275 aaPredicted RBP5.33□□□□□ -1.56
ATG4YNL223W EHD3P28817 500 aa5.33□□□□□ -1.56
ATG4YNL223W WBP1P33767 430 aaKnown RBP5.33□□□□□ -1.56
ATG4YNL223W ANR2P36090 516 aaPredicted RBP5.33□□□□□ -1.56
ATG4YNL223W POP1P41812 875 aa5.33□□□□□ -1.56
ATG4YNL223W IRC18P47056 224 aa5.33□□□□□ -1.56
ATG4YNL223W ATG21Q02887 496 aa5.33□□□□□ -1.56
ATG4YNL223W COX20Q04935 205 aa5.33□□□□□ -1.56
ATG4YNL223W RBS1Q05672 457 aaKnown RBP5.33□□□□□ -1.56
ATG4YNL223W MRPL51Q06090 140 aaPredicted RBP5.33□□□□□ -1.56
ATG4YNL223W RGC1Q06108 1083 aaKnown RBP5.33□□□□□ -1.56
ATG4YNL223W HNT3Q08702 217 aa5.33□□□□□ -1.56
ATG4YNL223W TIR4Q12218 487 aaPredicted RBP5.33□□□□□ -1.56
ATG4YNL223W CSF1Q12150 2958 aa5.33□□□□□ -1.56
ATG4YNL223W OPI3P05375 206 aa5.32□□□□□ -1.56
ATG4YNL223W HIS3P06633 220 aa5.32□□□□□ -1.56
ATG4YNL223W PEP4P07267 405 aaKnown RBP5.32□□□□□ -1.56
ATG4YNL223W RPS18AP0CX55 146 aaKnown RBP5.32□□□□□ -1.56
ATG4YNL223W RPS18BP0CX56 146 aaPredicted RBP5.32□□□□□ -1.56
ATG4YNL223W RAD51P25454 400 aa5.32□□□□□ -1.56
ATG4YNL223W HOM6P31116 359 aaKnown RBP5.32□□□□□ -1.56
ATG4YNL223W TMA19P35691 167 aaKnown RBP5.32□□□□□ -1.56
ATG4YNL223W SHE2P36068 246 aaKnown RBP RIP-Chip data5.32□□□□□ -1.56not detected
ATG4YNL223W YKR073CP36153 106 aa5.32□□□□□ -1.56
ATG4YNL223W SRL3P36167 246 aa5.32□□□□□ -1.56
ATG4YNL223W CHS7P38843 316 aa5.32□□□□□ -1.56
ATG4YNL223W YER184CP39961 794 aa5.32□□□□□ -1.56
ATG4YNL223W PGU1P47180 361 aa5.32□□□□□ -1.56
ATG4YNL223W MSE1P48525 536 aa5.32□□□□□ -1.56
ATG4YNL223W NUP116Q02630 1113 aa5.32□□□□□ -1.56
ATG4YNL223W PFA5Q03289 374 aa5.32□□□□□ -1.56
ATG4YNL223W RSM28Q03430 361 aa5.32□□□□□ -1.56
ATG4YNL223W SCS7Q03529 384 aa5.32□□□□□ -1.56
ATG4YNL223W PLB2Q03674 706 aa5.32□□□□□ -1.56
ATG4YNL223W CGI121Q03705 181 aaKnown RBP5.32□□□□□ -1.56
ATG4YNL223W YDR249CQ03787 373 aa5.32□□□□□ -1.56
ATG4YNL223W DFG5Q05031 458 aa5.32□□□□□ -1.56
ATG4YNL223W MDM30Q05930 598 aa5.32□□□□□ -1.56
ATG4YNL223W IRC19Q07843 230 aa5.32□□□□□ -1.56
ATG4YNL223W YOR378WQ08902 515 aa5.32□□□□□ -1.56
ATG4YNL223W ATG41Q12048 136 aa5.32□□□□□ -1.56
ATG4YNL223W CDC9P04819 755 aa5.32□□□□□ -1.56
ATG4YNL223W STE12P13574 688 aa5.32□□□□□ -1.56
ATG4YNL223W CPR2P23285 205 aa5.32□□□□□ -1.56
ATG4YNL223W PPA2P28239 310 aa5.32□□□□□ -1.56
ATG4YNL223W PAU2P32612 120 aa5.32□□□□□ -1.56
ATG4YNL223W MTH1P35198 433 aa5.32□□□□□ -1.56
ATG4YNL223W PEX32P38292 413 aa5.32□□□□□ -1.56
ATG4YNL223W OM14P38325 134 aa5.32□□□□□ -1.56
ATG4YNL223W LEU5P38702 357 aa5.32□□□□□ -1.56
ATG4YNL223W RTT105P40063 208 aa5.32□□□□□ -1.56
ATG4YNL223W PKP1P40530 394 aa5.32□□□□□ -1.56
ATG4YNL223W ECL1P48235 211 aa5.32□□□□□ -1.56
ATG4YNL223W BRR6P53062 197 aa5.32□□□□□ -1.56
ATG4YNL223W TPN1P53099 579 aa5.32□□□□□ -1.56
ATG4YNL223W ERV29P53337 310 aa5.32□□□□□ -1.56
ATG4YNL223W DMA2P53924 522 aa5.32□□□□□ -1.56
ATG4YNL223W TPO3Q06451 622 aa5.32□□□□□ -1.56
ATG4YNL223W YPL199CQ08954 240 aa5.32□□□□□ -1.56
ATG4YNL223W BAG7Q12128 409 aa5.32□□□□□ -1.56
ATG4YNL223W HSP42Q12329 375 aa5.32□□□□□ -1.56
Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms