RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeast

Gene VPS29, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS29	YHR012W	NDL1	Q06568	189 aa		4.24	□□□□□ -1.73
VPS29	YHR012W	HSP33	Q08914	237 aa	Known RBP	4.24	□□□□□ -1.73
VPS29	YHR012W	HSP32	Q08992	237 aa		4.24	□□□□□ -1.73
VPS29	YHR012W	RPB8	P20436	146 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	RRP7	P25368	297 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS29	YHR012W	RPN2	P32565	945 aa	Known RBP	4.23	□□□□□ -1.73
VPS29	YHR012W	ISC10	P32645	267 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	CLB6	P32943	380 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	RIB1	P38066	345 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	MLH1	P38920	769 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	SLZ1	P40167	298 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	CAK1	P43568	368 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS29	YHR012W	SAM37	P50110	327 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	MNT4	P53745	580 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	APM1	Q00776	475 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS29	YHR012W	SKO1	Q02100	647 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	CTS2	Q06350	511 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	TAZ1	Q06510	381 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	GPI11	Q06636	219 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	RSC58	Q07979	502 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	MIM1	Q08176	113 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	SNX3	Q08826	162 aa	Known RBP	4.23	□□□□□ -1.73
VPS29	YHR012W	ADF1	Q2V2Q1	113 aa		4.23	□□□□□ -1.73
VPS29	YHR012W	CCW14	O13547	238 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	MRP10	O75012	95 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	YOL162W	P0CF19	215 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	ARO3	P14843	370 aa	Known RBP	4.22	□□□□□ -1.73
VPS29	YHR012W	ERG4	P25340	473 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	DAL80	P26343	269 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	RPB9	P27999	122 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
VPS29	YHR012W	YME2	P32843	850 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	MNS1	P32906	549 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	ARC19	P33204	171 aa	Known RBP	4.22	□□□□□ -1.73
VPS29	YHR012W	ECM14	P38836	430 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	ALP1	P38971	573 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	YER121W	P40076	114 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	MPM1	P40364	252 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	YIR020C	P40575	100 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	NIT3	P49954	291 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	UBC13	P52490	153 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	YIP4	P53093	235 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	MTM1	P53320	366 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	COS1	P53822	381 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	YNL095C	P53932	642 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	DML1	Q03652	475 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	HMO1	Q03973	246 aa	Known RBP	4.22	□□□□□ -1.73
VPS29	YHR012W	SPC2	Q04969	178 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	YTH1	Q06102	208 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS29	YHR012W	SKI7	Q08491	747 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS29	YHR012W	FIT3	Q08907	204 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	IZH2	Q12442	317 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	FSH3	Q99369	266 aa		4.22	□□□□□ -1.73
VPS29	YHR012W	CYC7	P00045	113 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	RPS23A	P0CX29	145 aa	Known RBP	4.21	□□□□□ -1.74
VPS29	YHR012W	RPS23B	P0CX30	145 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	DPM1	P14020	267 aa	Known RBP	4.21	□□□□□ -1.74
VPS29	YHR012W	RHB1	P25378	209 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	YCR100C	P25606	316 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	TFC1	P32367	649 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	PEX6	P33760	1030 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	YBR241C	P38142	488 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	ISC1	P40015	477 aa	Known RBP	4.21	□□□□□ -1.74
VPS29	YHR012W	YER188W	P40103	239 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	YIL029C	P40538	142 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	MDJ2	P42834	146 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	IRC5	P43610	853 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	IRC7	P43623	340 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	BRR6	P53062	197 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	ERP6	P53198	216 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	SYF2	P53277	215 aa	Predicted RBP	4.21	□□□□□ -1.74
VPS29	YHR012W	YNL046W	P53956	172 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	HOT1	Q03213	719 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	RSM24	Q03976	319 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	GMC1	Q04399	608 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	HFD1	Q04458	532 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	RNH203	Q12338	110 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	HMS1	Q12398	434 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	RRI1	Q12468	440 aa		4.21	□□□□□ -1.74
VPS29	YHR012W	YER145C-A	A0A023PYF4	145 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	RPL6B	P05739	176 aa	Known RBP	4.2	□□□□□ -1.74
VPS29	YHR012W	MSI1	P13712	422 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	HNM1	P19807	563 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	SED4	P25365	1065 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	RPS5	P26783	225 aa	Known RBP	4.2	□□□□□ -1.74
VPS29	YHR012W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
VPS29	YHR012W	CLG1	P35190	452 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	SKG1	P36169	355 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	SRO77	P38163	1010 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	VBA2	P38358	474 aa	Known RBP	4.2	□□□□□ -1.74
VPS29	YHR012W	RPS20	P38701	121 aa	Known RBP	4.2	□□□□□ -1.74
VPS29	YHR012W	RPP1	P38786	293 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	RIO2	P40160	425 aa	Known RBP	4.2	□□□□□ -1.74
VPS29	YHR012W	QDR1	P40475	563 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	VHR1	P40522	640 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	EGT2	P42835	1041 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	CHA4	P43634	648 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	NCA3	P46955	337 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	YJL055W	P47044	245 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	YIP5	P53108	310 aa		4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 23.3 ms