RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 KLRC1P26715 233 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 CALRP27797 417 aaKnown RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 MAN1A1P33908 653 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 GCLCP48506 637 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 CCNA1P78396 465 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 ADCY2Q08462 1091 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 CALCOCO2Q13137 446 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 PPIGQ13427 754 aaKnown RBP eCLIP4.3□□□□□ -1.727e-7■□□□□ 8.8
SCN1A-214ENST00000637038 ZKSCAN8Q15776 578 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 SNCBQ16143 134 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 ECM1Q16610 540 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 ASTE1Q2TB18 679 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 EMC10Q5UCC4 262 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 NAA35Q5VZE5 725 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 PSRC1Q6PGN9 363 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 FOXR1Q6PIV2 292 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 IQCKQ8N0W5 287 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 CCDC197Q8NCU1 140 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 HPS3Q969F9 1004 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 ARL8AQ96BM9 186 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 CCT8L2Q96SF2 557 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 IWS1Q96ST2 819 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 CCDC77Q9BR77 488 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 GLIS2Q9BZE0 524 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 COA1Q9GZY4 146 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 KANSL2Q9H9L4 492 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 PPANQ9NQ55 473 aaKnown RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 LMCD1Q9NZU5 365 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 SRRDQ9UH36 339 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 TRAF3IP3Q9Y228 551 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 PCDHA1Q9Y5I3 950 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 MYH11P35749 1972 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 POTECB2RU33 542 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 PODXLO00592 558 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 RGS16O15492 202 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SLC37A4O43826 429 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 TMEM253P0C7T8 217 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SRGAP2BP0DMP2 458 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 RNASE9P60153 205 aaKnown RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 DHX9Q08211 1270 aaKnown RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 IFT88Q13099 833 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 PPP2R5AQ15172 486 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 UBE2SQ16763 222 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 ZCWPW2Q504Y3 356 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SWT1Q5T5J6 900 aaKnown RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 C6orf118Q5T5N4 469 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 PODNQ7Z5L7 613 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 FBXO11Q86XK2 927 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 ADGRF4Q8IZF3 695 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 MS4A14Q96JA4 679 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 IFT74Q96LB3 600 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 RNPC3Q96LT9 517 aaKnown RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 INPP4AQ96PE3 977 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SELENOSQ9BQE4 189 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 HOMER3Q9NSC5 361 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 GINM1Q9NU53 330 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 USP40Q9NVE5 1235 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 PRKAG3Q9UGI9 489 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 A0A087X0T9 212 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 POTEB3A0JP26 581 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 TESPA1A2RU30 521 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 KBTBD13C9JR72 458 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 GLI1P08151 1106 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 FAM228BP0C875 321 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 PRKAR2AP13861 404 aaKnown RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 IL1R1P14778 569 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 CYP11B2P19099 503 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 MUTP22033 750 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 CHRNA3P32297 505 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 MYL7Q01449 175 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 DR1Q01658 176 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 BYSLQ13895 437 aaKnown RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 PRR16Q569H4 304 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 TTMPQ5BVD1 217 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 MFSD14CQ5VZR4 134 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 HGSNATQ68CP4 663 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SLFN13Q68D06 897 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 PRR5LQ6MZQ0 368 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 POTEBQ6S5H4 581 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 PACS2Q86VP3 889 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 MICALL2Q8IY33 904 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 TSEN2Q8NCE0 465 aaKnown RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 TPCN2Q8NHX9 752 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 HDAC7Q8WUI4 952 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 TEKT1Q969V4 418 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 NCAPGQ9BPX3 1015 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 JMJD4Q9H9V9 463 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 KCND2Q9NZV8 630 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 NAGPAQ9UK23 515 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 GAKO14976 1311 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 A0A1B0GUA9 196 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 ESYT3A0FGR9 886 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 E9PMD0 336 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 EYA4O95677 639 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 RPA1P27694 616 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SOX5P35711 763 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 HSD17B3P37058 310 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SMTNP53814 917 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 NEDD9Q14511 834 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms