RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 TRIM54Q9BYV2 358 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 ALDH8A1Q9H2A2 487 aaPredicted RBP14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 DDX5P17844 614 aaKnown RBP14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 MCAMP43121 646 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 NSUN2Q08J23 767 aaKnown RBP eCLIP14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 RABGAP1LQ5R372 815 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 CAPRIN2Q6IMN6 1127 aaKnown RBP14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 TRIM62Q9BVG3 475 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 INTS2Q9H0H0 1204 aaKnown RBP14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 MRGBPQ9NV56 204 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 IRAK4Q9NWZ3 460 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 SMG5Q9UPR3 1016 aaKnown RBP14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 PPP1R37O75864 691 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 MYO1DO94832 1006 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 AGTP01019 485 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 HSPA9P38646 679 aaKnown RBP14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 RAP1GDS1P52306 607 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 TSPY1Q01534 308 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 ROR1Q01973 937 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 POU5F1BQ06416 359 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 KCNB1Q14721 858 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 TRADDQ15628 312 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 ZBED8Q8IZ13 594 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 ARMC2Q8NEN0 867 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 ARL2BPQ9Y2Y0 163 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 CPSF1Q10570 1443 aaKnown RBP14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 CFAP69A5D8W1 941 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 AP3B1O00203 1094 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 SLC1A1P43005 524 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 QARSP47897 775 aaKnown RBP14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 GPC3P51654 580 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 ZNF568Q3ZCX4 644 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 IZUMO3Q5VZ72 239 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 LRRC8BQ6P9F7 803 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 MTHFD1LQ6UB35 978 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 MMTAG2Q9BU76 263 aaKnown RBP14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 OSBPL1AQ9BXW6 950 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 PPCSQ9HAB8 311 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 FBXL5Q9UKA1 691 aa14.01□□□□□ -0.17
CSPG4P11-201ENST00000560634 PTCH1Q13635 1447 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 ZNF197O14709 1029 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 ZNF211Q13398 564 aaPredicted RBP14□□□□□ -0.17
CSPG4P11-201ENST00000560634 EFHC2Q5JST6 749 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 NSUN6Q8TEA1 469 aaKnown RBP14□□□□□ -0.17
CSPG4P11-201ENST00000560634 FAM213AQ9BRX8 229 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 NEUROG2Q9H2A3 272 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 SLC4A7Q9Y6M7 1214 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 ESYT3A0FGR9 886 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 DENND3A2RUS2 1198 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 GNA15P30679 374 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 ATICP31939 592 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 PRAMEP78395 509 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 NFX1Q12986 1120 aaKnown RBP14□□□□□ -0.17
CSPG4P11-201ENST00000560634 FRMD5Q7Z6J6 570 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 ATL2Q8NHH9 583 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 COG4Q9H9E3 785 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 KLC4Q9NSK0 619 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 HOXC10Q9NYD6 342 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 MAGI2Q86UL8 1455 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 TARBP1Q13395 1621 aaKnown RBP14□□□□□ -0.17
CSPG4P11-201ENST00000560634 BNIP3LO60238 219 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 GH2P01242 217 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 KITP10721 976 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 SERPINB10P48595 397 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 ACTR2P61160 394 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 ABCE1P61221 599 aaKnown RBP14□□□□□ -0.17
CSPG4P11-201ENST00000560634 AP1B1Q10567 949 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 RCSD1Q6JBY9 416 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 CLEC17AQ6ZS10 378 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 FAM49AQ9H0Q0 323 aaPredicted RBP14□□□□□ -0.17
CSPG4P11-201ENST00000560634 BATF3Q9NR55 127 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 FEM1BQ9UK73 627 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 H0Y626 953 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 ABCB11O95342 1321 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 TRIM16O95361 564 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 TXNRD1Q16881 649 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 STAG2Q8N3U4 1231 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 PCDHGB4Q9UN71 923 aa14□□□□□ -0.17
CSPG4P11-201ENST00000560634 MEFVO15553 781 aaPredicted RBP13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 EFCAB14O75071 495 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 FDX1P10109 184 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 ACTN3Q08043 901 aaPredicted RBP13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 HIC1Q14526 733 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 SLC27A3Q5K4L6 730 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 PASD1Q8IV76 773 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 ZNF341Q9BYN7 854 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 GPBP1L1Q9HC44 474 aaPredicted RBP13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 HACD3Q9P035 362 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 KIF17Q9P2E2 1029 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 E5RI56 91 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 LTKP29376 864 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 GRM4Q14833 912 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 CCDC144BQ3MJ40 725 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 SPATA21Q7Z572 469 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 MB21D2Q8IYB1 491 aaPredicted RBP13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 GOLPH3LQ9H4A5 285 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 MLXIPLQ9NP71 852 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 EHD2Q9NZN4 543 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 PCSK1NQ9UHG2 260 aa13.99□□□□□ -0.17
CSPG4P11-201ENST00000560634 KIAA0391O15091 583 aaKnown RBP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms