RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 FGFR4P22455 802 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 CD86P42081 329 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 RXRGP48443 463 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 OAZ1P54368 228 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 NR1H3Q13133 447 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 RAB33AQ14088 237 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 NAA30Q147X3 362 aaPredicted RBP3□□□□□ -1.93
PRPF39-206ENST00000554429 SEPT7Q16181 437 aaKnown RBP3□□□□□ -1.93
PRPF39-206ENST00000554429 CCDC178Q5BJE1 867 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 MZT2BQ6NZ67 158 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 PACS1Q6VY07 963 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 TMEM179Q6ZVK1 233 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 C16orf86Q6ZW13 317 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 THNSL2Q86YJ6 484 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 ERC1Q8IUD2 1116 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 CCDC65Q8IXS2 484 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 NKAIN3Q8N8D7 197 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 MAFAQ8NHW3 353 aaPredicted RBP3□□□□□ -1.93
PRPF39-206ENST00000554429 HERVK_113Q902F9 699 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 ARHGEF2Q92974 986 aaKnown RBP3□□□□□ -1.93
PRPF39-206ENST00000554429 TRIM43Q96BQ3 446 aaPredicted RBP3□□□□□ -1.93
PRPF39-206ENST00000554429 MAML3Q96JK9 1138 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 CHAMP1Q96JM3 812 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 CCDC17Q96LX7 622 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 NEK1Q96PY6 1258 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 STRBPQ96SI9 672 aaKnown RBP3□□□□□ -1.93
PRPF39-206ENST00000554429 BAG1Q99933 345 aaPredicted RBP3□□□□□ -1.93
PRPF39-206ENST00000554429 MOV10L1Q9BXT6 1211 aaKnown RBP3□□□□□ -1.93
PRPF39-206ENST00000554429 SH2D4AQ9H788 454 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 ZFATQ9P243 1243 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 SERPINB13Q9UIV8 391 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 TACC3Q9Y6A5 838 aa3□□□□□ -1.93
PRPF39-206ENST00000554429 SCN10AQ9Y5Y9 1956 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 FAM196BA6NMK8 535 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 KBTBD13C9JR72 458 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 F8VZ95 297 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 SRGAP3O43295 1099 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 PRPF40AO75400 957 aaKnown RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 ADH1CP00326 375 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 TIMP1P01033 207 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 SLC3A2P08195 630 aaKnown RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 CLTBP09497 229 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 ALAS1P13196 640 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 GRK2P25098 689 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 SKIV2L2P42285 1042 aaKnown RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 MATR3P43243 847 aaKnown RBP eCLIP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 TNNT3P45378 269 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 MXI1P50539 228 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 SLC12A2P55011 1212 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 PLIN5Q00G26 463 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 ATP2B2Q01814 1243 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 AKAP17AQ02040 695 aaKnown RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 SHHQ15465 462 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 CCNG2Q16589 344 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 ABCB5Q2M3G0 1257 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 MAJINQ3KP22 176 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 CERKLQ49MI3 558 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 FAM102BQ5T8I3 360 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 MCTP1Q6DN14 999 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 Q7L0L9 218 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 IQCA1Q86XH1 822 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 SIAH1Q8IUQ4 282 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 PPM1NQ8N819 430 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 FAM174AQ8TBP5 190 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 SUN5Q8TC36 379 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 FBF1Q8TES7 1133 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 NUP133Q8WUM0 1156 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 RABGGTAQ92696 567 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 ELAC2Q9BQ52 826 aaKnown RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 PIH1D3Q9NQM4 214 aaKnown RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 PAPOLBQ9NRJ5 636 aaKnown RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 TMEM260Q9NX78 707 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 ARPC4-TTLL3A0A0A6YYG9 625 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 IGKV6D-41A0A0C4DH26 115 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 PNMA6EA0A0J9YXQ4 647 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 KRBA1A5PL33 1030 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 SMCHD1A6NHR9 2005 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 PMM2O15305 246 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 SART1O43290 800 aaKnown RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 KLF4O43474 513 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 PAHP00439 452 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 GH2P01242 217 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 TRIM27P14373 513 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 ZNF24P17028 368 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 MUTP22033 750 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 CCNCP24863 283 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 ADORA2AP29274 412 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 HOXD12P35452 270 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 NOVP48745 357 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 NASPP49321 788 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-206ENST00000554429 CENPAP49450 140 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 GJA9P57773 515 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 PPIGQ13427 754 aaKnown RBP eCLIP2.99□□□□□ -1.933e-9■■■■□ 25.1
PRPF39-206ENST00000554429 RASA2Q15283 850 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 ELF2Q15723 593 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 PKN1Q16512 942 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 SBK1Q52WX2 424 aa2.99□□□□□ -1.93
PRPF39-206ENST00000554429 WDR44Q5JSH3 913 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms