RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 USP17L22D6RA61 530 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 USP17L17D6RBQ6 530 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 USP17L19D6RCP7 530 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 USP17L20D6RJB6 530 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ZBTB39O15060 712 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ENTPD5O75356 428 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 FLOT1O75955 427 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 AFPP02771 609 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 PYGMP11217 842 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 TARSP26639 723 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 CTCFP49711 727 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ADCY7P51828 1080 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 USP17L24Q0WX57 530 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 PSMD2Q13200 908 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 PABPC4Q13310 644 aaKnown RBP eCLIP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 USP17L6PQ6QN14 398 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 SFR1Q86XK3 245 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 KIAA0825Q8IV33 1275 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ZC3H3Q8IXZ2 948 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 UCMAQ8WVF2 138 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 DYDC1Q8WWB3 177 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ARHGEF2Q92974 986 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 NAF1Q96HR8 494 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 SYT11Q9BT88 431 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 KCNK9Q9NPC2 374 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 SLCO1B3Q9NPD5 702 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 SPATS2LQ9NUQ6 558 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 DDX25Q9UHL0 483 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ALG6Q9Y672 507 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ASTN1O14525 1302 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 AHDC1Q5TGY3 1603 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 SMAPO00193 183 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 CETN3O15182 167 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 CHMP2AO43633 222 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 PEX11AO75192 247 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 GJB6O95452 261 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 AGTP01019 485 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 PDE6CP51160 858 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 CYP4A11Q02928 519 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 ADCY2Q08462 1091 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 SF3B3Q15393 1217 aaKnown RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 TRIP13Q15645 432 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 ZYXQ15942 572 aaKnown RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 ZNF568Q3ZCX4 644 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 CBWD6Q4V339 395 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 CBWD3Q5JTY5 395 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 CBWD5Q5RIA9 395 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 RNF220Q5VTB9 566 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 ARHGAP27Q6ZUM4 889 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 SPATA21Q7Z572 469 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 COL23A1Q86Y22 540 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 FAM118BQ9BPY3 351 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 REEP2Q9BRK0 252 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 RUSC1Q9BVN2 902 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 RAB17Q9H0T7 212 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 MYLK2Q9H1R3 596 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 CDC42EP4Q9H3Q1 356 aaKnown RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 BATF3Q9NR55 127 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 PKD2L1Q9P0L9 805 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 ZFATQ9P243 1243 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 HAO1Q9UJM8 370 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 PCDHA12Q9UN75 941 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 SPATA31A1Q5TZJ5 1347 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 KLHL33A6NCF5 533 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 ANKRD33BA6NCL7 494 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 HLA-DOAP06340 250 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 TRIM49P0CI25 452 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 TRIM49CP0CI26 452 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 T-ENOLP0DO92 83 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 FGFR1P11362 822 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 XRCC5P13010 732 aaKnown RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 HSPA1LP34931 641 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 RAB27AP51159 221 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 SLC12A3P55017 1021 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 PDIA5Q14554 519 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 DRAP1Q14919 205 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 KYNUQ16719 465 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 ARHGAP44Q17R89 818 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 ZC2HC1CQ53FD0 456 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 C6orf118Q5T5N4 469 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 DAB2IPQ5VWQ8 1189 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 FOXB2Q5VYV0 432 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 CCDC137Q6PK04 289 aaKnown RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 SLF2Q8IX21 1173 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 ATG4AQ8WYN0 398 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 RPS6KC1Q96S38 1066 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 HERPUD2Q9BSE4 406 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 NARFQ9UHQ1 456 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 USP21Q9UK80 565 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 GRID1Q9ULK0 1009 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 TTC7AQ9ULT0 858 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 PIAS1O75925 651 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 CBX6O95503 412 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 TPBGLP0DKB5 382 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 GNAT1P11488 350 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 ERFP50548 548 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 RAD23BP54727 409 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 MAP2K1Q02750 393 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 GIT2Q14161 759 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 RRP1BQ14684 758 aaKnown RBP5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms