RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 FAM210AQ96ND0 272 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 WDR24Q96S15 920 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 PNKPQ96T60 521 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 JPH2Q9BR39 696 aaPredicted RBP3.6□□□□□ -1.83
CSDE1-216ENST00000534389 BOCQ9BWV1 1114 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 TEX13AQ9BXU3 409 aaPredicted RBP3.6□□□□□ -1.83
CSDE1-216ENST00000534389 NUP62CLQ9H1M0 184 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 BCAS3Q9H6U6 928 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 ANKZF1Q9H8Y5 726 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 NGRNQ9NPE2 291 aaKnown RBP3.6□□□□□ -1.83
CSDE1-216ENST00000534389 THG1LQ9NWX6 298 aaKnown RBP3.6□□□□□ -1.83
CSDE1-216ENST00000534389 ETAA1Q9NY74 926 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 TERF2IPQ9NYB0 399 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 RTEL1Q9NZ71 1219 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 FBLN5Q9UBX5 448 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 DNAI1Q9UI46 699 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 CBLCQ9ULV8 474 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 L1RE1Q9UN81 338 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 COL4A3BPQ9Y5P4 624 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 ABCC4O15439 1325 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 TTC41PQ6P2S7 1318 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 PHLPP2Q6ZVD8 1323 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 TTC21AQ8NDW8 1320 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 ADCY9O60503 1353 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 PTCH1Q13635 1447 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 ATP10DQ9P241 1426 aa3.6□□□□□ -1.83
CSDE1-216ENST00000534389 GPATCH8Q9UKJ3 1502 aaKnown RBP3.6□□□□□ -1.83
CSDE1-216ENST00000534389 CC2D2AQ9P2K1 1620 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 CROCC2H7BZ55 1655 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 CEP152O94986 1710 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 VWA3AA6NCI4 1184 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 MYO1FO00160 1098 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 NFIBO00712 420 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 PAX4O43316 350 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 URI1O94763 535 aaPredicted RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ERLIN2O94905 339 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 SYF2O95926 243 aaKnown RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 TFRCP02786 760 aaKnown RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 HMGB1P09429 215 aaKnown RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 NCAM1P13591 858 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 GJA4P35212 333 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 MTHFSP49914 203 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 RPS6KA3P51812 740 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 NCKAP1LP55160 1127 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 CCT2P78371 535 aaKnown RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ACTN3Q08043 901 aaPredicted RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 DDR1Q08345 913 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 GOLGA8FQ08AF8 430 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 GOLGA8DPQ0D2H9 430 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 DHX8Q14562 1220 aaKnown RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 CRYMQ14894 314 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 BRD3Q15059 726 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 PCBP1Q15365 356 aaKnown RBP eCLIP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ZRSR1Q15695 479 aaKnown RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 SLC5A9Q2M3M2 681 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ATP13A4Q4VNC1 1196 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 FIGNQ5HY92 759 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 JAKMIP3Q5VZ66 844 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ARMC3Q5W041 872 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 TSHZ3Q63HK5 1081 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 CPZQ66K79 652 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 AMIGO3Q86WK7 504 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ERC1Q8IUD2 1116 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ANKRD13AQ8IZ07 590 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 KIRREL3Q8IZU9 778 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 TSPYL6Q8N831 410 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ANKRD44Q8N8A2 993 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 CTCFLQ8NI51 663 aaPredicted RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 CCDC26Q8TAB7 109 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 UHMK1Q8TAS1 419 aaKnown RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ZNF526Q8TF50 670 aaPredicted RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 RABGGTAQ92696 567 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 N4BP2L2Q92802 583 aaPredicted RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 SHISA4Q96DD7 197 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 BAG1Q99933 345 aaPredicted RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 SLX1AQ9BQ83 275 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 BICC1Q9H694 974 aaKnown RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 IFT22Q9H7X7 185 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 SP110Q9HB58 689 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ARFGAP3Q9NP61 516 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ARGLU1Q9NWB6 273 aaPredicted RBP3.59□□□□□ -1.83
CSDE1-216ENST00000534389 IRAK4Q9NWZ3 460 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 DACT1Q9NYF0 836 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 KLHL14Q9P2G3 628 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ASH2LQ9UBL3 628 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 RAB21Q9UL25 225 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 SRPK3Q9UPE1 567 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ZNF652Q9Y2D9 606 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 HCFC2Q9Y5Z7 792 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 FAM169AQ9Y6X4 670 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 IL16Q14005 1332 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 SALL3Q9BXA9 1300 aa3.59□□□□□ -1.83
CSDE1-216ENST00000534389 ERVK-7P63135 1459 aa3.59□□□□□ -1.84
CSDE1-216ENST00000534389 SHANK2Q9UPX8 1470 aa3.59□□□□□ -1.84
CSDE1-216ENST00000534389 DNMBPQ6XZF7 1577 aa3.59□□□□□ -1.84
CSDE1-216ENST00000534389 CUL7Q14999 1698 aa3.59□□□□□ -1.84
CSDE1-216ENST00000534389 CCDC151A5D8V7 595 aa3.58□□□□□ -1.84
CSDE1-216ENST00000534389 TCAF2A6NFQ2 919 aa3.58□□□□□ -1.84
CSDE1-216ENST00000534389 LRRIQ3A6PVS8 624 aaPredicted RBP3.58□□□□□ -1.84
CSDE1-216ENST00000534389 ZNF891A8MT65 544 aaPredicted RBP3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms