RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 SNPHO15079 494 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 TUBA4AP68366 448 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 WAPLQ7Z5K2 1190 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 DENND6AQ8IWF6 608 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 CYGBQ8WWM9 190 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 RBM17Q96I25 401 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 CDHR1Q96JP9 859 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 VCPKMTQ9H867 229 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 LRCH1Q9Y2L9 728 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 GRIN2BQ13224 1484 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 PVALEFA0A1B0GWK0 134 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 COBLO75128 1261 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 KRT20P35900 424 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 EIF2B2P49770 351 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 KIF22Q14807 665 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 PTGISQ16647 500 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 HIF1AQ16665 826 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 PNMA1Q8ND90 353 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 NSUN7Q8NE18 718 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 OTULINQ96BN8 352 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 GPR108Q9NPR9 543 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 SFMBT1Q9UHJ3 866 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 DNAJC12Q9UKB3 198 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 NSFL1CQ9UNZ2 370 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 B2RBV5 119 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 CIITAP33076 1130 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 TALDO1P37837 337 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 SGSM1Q2NKQ1 1148 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 ASPRV1Q53RT3 343 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 C4orf22Q6V702 233 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 RHOT1Q8IXI2 618 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 ATL2Q8NHH9 583 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 TSPAN17Q96FV3 270 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 DDX39AO00148 427 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 CHL1O00533 1208 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 RGS20O76081 388 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 ENO1P06733 434 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 IMPDH2P12268 514 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 NQO1P15559 274 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 KCNA1Q09470 495 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 EIF4A2Q14240 407 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 TRIP13Q15645 432 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 RSBN1Q5VWQ0 802 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 FBXO11Q86XK2 927 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 CDC26Q8NHZ8 85 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 PIGOQ8TEQ8 1089 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 PARD3BQ8TEW8 1205 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 GPR101Q96P66 508 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 KIAA1024Q9UPX6 916 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 TNKSO95271 1327 aa11.87□□□□□ -0.51
LIMCH1-217ENST00000512946 KLRF2D3W0D1 207 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 KLHL41O60662 606 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 CHN1P15882 459 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 IFNAR1P17181 557 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 ITGA1P56199 1179 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 WASHC2DQ5SRD0 308 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 KDM7AQ6ZMT4 941 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 NANOGNBQ7Z5D8 188 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 RYBPQ8N488 228 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 JDP2Q8WYK2 163 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 INPP5DQ92835 1189 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 PHF23Q9BUL5 403 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 CEP44Q9C0F1 390 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 PSMC3IPQ9P2W1 217 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 IP6K2Q9UHH9 426 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 RTCBQ9Y3I0 505 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 SNAPC4Q5SXM2 1469 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 CFAP99D6REC4 459 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 MAFGO15525 162 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 ITGA6P23229 1130 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 POLGP54098 1239 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 Q4G0T1 1027 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 KRT73Q86Y46 540 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 ZCCHC7Q8N3Z6 543 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 C19orf18Q8NEA5 215 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 PPP2R3CQ969Q6 453 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 LRRC59Q96AG4 307 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 THTPAQ9BU02 230 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 SNX12Q9UMY4 172 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 ABCC4O15439 1325 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 ACEP12821 1306 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 TRAPPC8Q9Y2L5 1435 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 EIF2AK4Q9P2K8 1649 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 GOLGA8SH3BPF8 625 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 IGF2BP3O00425 579 aaKnown RBP eCLIP11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 AHCYL1O43865 530 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 UBTFL6P0CB48 400 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 ADD1P35611 737 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 DYNLT1P63172 113 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 CTDSPL2Q05D32 466 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 KDSRQ06136 332 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 DMPKQ09013 629 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 MTHFSDQ2M296 383 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 ARMC4Q5T2S8 1044 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 TTC23LQ6PF05 361 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 NSMFQ6X4W1 530 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 NLRP9Q7RTR0 991 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 FAM45AQ8TCE6 357 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 RFFLQ8WZ73 363 aa11.86□□□□□ -0.51
LIMCH1-217ENST00000512946 VPS50Q96JG6 964 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms