RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 ACAP1Q15027 740 aa7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 BRDTQ58F21 947 aaPredicted RBP7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 C19orf54Q5BKX5 351 aa7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 ADGRE4PQ86SQ3 457 aa7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 TTC9BQ8N6N2 239 aa7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 FATE1Q969F0 183 aa7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 ZFR2Q9UPR6 939 aaKnown RBP7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 SPEF1Q9Y4P9 236 aa7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 SLC30A1Q9Y6M5 507 aa7.66□□□□□ -1.18
CCDC88A-206ENST00000430086 FOXS1O43638 330 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 TMEM127O75204 238 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 AGXTP21549 392 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 WNT3AP56704 352 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 CDK17Q00537 523 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 EXOSC10Q01780 885 aaKnown RBP7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 UBE3CQ15386 1083 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 ADRM1Q16186 407 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 LCE4AQ5TA78 99 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 PGM2L1Q6PCE3 622 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 BTNL9Q6UXG8 535 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 FAXDC2Q96IV6 333 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 ING3Q9NXR8 418 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 GPR45Q9Y5Y3 372 aa7.65□□□□□ -1.18
CCDC88A-206ENST00000430086 SHTN1A0MZ66 631 aa7.64□□□□□ -1.19
CCDC88A-206ENST00000430086 FZD9O00144 591 aa7.64□□□□□ -1.19
CCDC88A-206ENST00000430086 ABCB5Q2M3G0 1257 aa7.64□□□□□ -1.19
CCDC88A-206ENST00000430086 KRT40Q6A162 431 aa7.64□□□□□ -1.19
CCDC88A-206ENST00000430086 CMTM4Q8IZR5 234 aa7.64□□□□□ -1.19
CCDC88A-206ENST00000430086 FUKQ8N0W3 1084 aa7.64□□□□□ -1.19
CCDC88A-206ENST00000430086 ACE2Q9BYF1 805 aaPredicted RBP7.64□□□□□ -1.19
CCDC88A-206ENST00000430086 IL23AQ9NPF7 189 aa7.64□□□□□ -1.19
CCDC88A-206ENST00000430086 SCOCQ9UIL1 159 aa7.64□□□□□ -1.19
CCDC88A-206ENST00000430086 A0A1W2PRX2 142 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 NRP1O14786 923 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 MYBL2P10244 700 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 CTSSP25774 331 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 ICAM4Q14773 271 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 MBNL2Q5VZF2 373 aaKnown RBP7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 MSL3Q8N5Y2 521 aaKnown RBP7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 GLB1L3Q8NCI6 653 aaPredicted RBP7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 Q8TCH9 128 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 SNX33Q8WV41 574 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 STAG1Q8WVM7 1258 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 FUBP3Q96I24 572 aaKnown RBP eCLIP7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 OR14A2Q96R54 314 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 SLC13A1Q9BZW2 595 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 ENKD1Q9H0I2 346 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 CD248Q9HCU0 757 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 MKS1Q9NXB0 559 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 DDX56Q9NY93 547 aaKnown RBP7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 PLA2G3Q9NZ20 509 aa7.63□□□□□ -1.19
CCDC88A-206ENST00000430086 TNKSO95271 1327 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 RPTORQ8N122 1335 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 UBE2QL1A1L167 161 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 ZNF623O75123 536 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 MT-CO1P00395 513 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 OSMP13725 252 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 EFEMP1Q12805 493 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 GRM7Q14831 915 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 GJC2Q5T442 439 aaPredicted RBP7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 LCE1DQ5T752 114 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 ABHD15Q6UXT9 468 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 POLNQ7Z5Q5 900 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 LOXL4Q96JB6 756 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 GREM2Q9H772 168 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 RCAN3Q9UKA8 241 aa7.62□□□□□ -1.19
CCDC88A-206ENST00000430086 PHF2O75151 1096 aa7.61□□□□□ -1.19
CCDC88A-206ENST00000430086 CCT2P78371 535 aaKnown RBP7.61□□□□□ -1.19
CCDC88A-206ENST00000430086 FOXL1Q12952 345 aa7.61□□□□□ -1.19
CCDC88A-206ENST00000430086 MALLQ13021 153 aa7.61□□□□□ -1.19
CCDC88A-206ENST00000430086 MUM1L1Q5H9M0 696 aa7.61□□□□□ -1.19
CCDC88A-206ENST00000430086 GPR156Q8NFN8 814 aa7.61□□□□□ -1.19
CCDC88A-206ENST00000430086 WWC2-AS2Q96NR7 200 aa7.61□□□□□ -1.19
CCDC88A-206ENST00000430086 MPHOSPH9Q99550 1183 aa7.61□□□□□ -1.19
CCDC88A-206ENST00000430086 TCF25Q9BQ70 676 aa7.61□□□□□ -1.19
CCDC88A-206ENST00000430086 KLHL33A6NCF5 533 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 KRTAP9-7A8MTY7 169 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 PCDHGA12O60330 932 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 PRAMEF4O60810 478 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 PDGFRBP09619 1106 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 GYPEP15421 78 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 NPEPPSP55786 919 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 PCBP2Q15366 365 aaKnown RBP eCLIP7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 CLUL1Q15846 466 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 FAM111BQ6SJ93 734 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 FAM180AQ6UWF9 173 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 RIN2Q8WYP3 895 aaPredicted RBP7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 JADE3Q92613 823 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 TLR9Q9NR96 1032 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 SMPD4Q9NXE4 827 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 JAG2Q9Y219 1238 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 PCDHGA9Q9Y5G4 932 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 PCDHGA8Q9Y5G5 932 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 PCDHGA7Q9Y5G6 932 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 PCDHGA6Q9Y5G7 932 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 PCDHGA3Q9Y5H0 932 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 PCDHGA2Q9Y5H1 932 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 MRFAP1Q9Y605 127 aa7.6□□□□□ -1.19
CCDC88A-206ENST00000430086 GASTP01350 101 aa7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 COMTP21964 271 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms