RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 AEBP2Q6ZN18 517 aaPredicted RBP30.17■■■□□ 2.42
CCDC88A-206ENST00000430086 CHIC1Q5VXU3 224 aa29.61■■■□□ 2.33
CCDC88A-206ENST00000430086 PHF23Q9BUL5 403 aaPredicted RBP26.03■■□□□ 1.76
CCDC88A-206ENST00000430086 SENP3Q9H4L4 574 aaPredicted RBP25.61■■□□□ 1.69
CCDC88A-206ENST00000430086 PLPPR3Q6T4P5 718 aa24.09■■□□□ 1.45
CCDC88A-206ENST00000430086 FOXD1Q16676 465 aa23.73■■□□□ 1.39
CCDC88A-206ENST00000430086 PPP6R1Q9UPN7 881 aa22.92■■□□□ 1.26
CCDC88A-206ENST00000430086 ADRA2BP18089 450 aa22.89■■□□□ 1.25
CCDC88A-206ENST00000430086 PIAS4Q8N2W9 510 aaPredicted RBP22.39■■□□□ 1.17
CCDC88A-206ENST00000430086 MSH5O43196 834 aa21.87■■□□□ 1.09
CCDC88A-206ENST00000430086 PPP4R3CPQ6ZMV5 832 aa21.23■□□□□ 0.99
CCDC88A-206ENST00000430086 SCAF1Q9H7N4 1312 aaKnown RBP21■□□□□ 0.95
CCDC88A-206ENST00000430086 KCNA4P22459 653 aa20.85■□□□□ 0.93
CCDC88A-206ENST00000430086 MAPK8IP2Q13387 824 aaPredicted RBP20.73■□□□□ 0.91
CCDC88A-206ENST00000430086 NCBP3Q53F19 620 aaKnown RBP20.73■□□□□ 0.91
CCDC88A-206ENST00000430086 CNKSR2Q8WXI2 1034 aa20.63■□□□□ 0.89
CCDC88A-206ENST00000430086 DMRT2Q9Y5R5 561 aa20.47■□□□□ 0.87
CCDC88A-206ENST00000430086 POTEDQ86YR6 584 aa20.41■□□□□ 0.86
CCDC88A-206ENST00000430086 NPM3O75607 178 aaKnown RBP20.4■□□□□ 0.86
CCDC88A-206ENST00000430086 RNF216Q9NWF9 866 aaPredicted RBP20.21■□□□□ 0.83
CCDC88A-206ENST00000430086 HOXD11P31277 338 aaPredicted RBP20.11■□□□□ 0.81
CCDC88A-206ENST00000430086 DNAJC5BQ9UF47 199 aa19.91■□□□□ 0.78
CCDC88A-206ENST00000430086 SLC4A1APQ9BWU0 796 aaKnown RBP19.88■□□□□ 0.77
CCDC88A-206ENST00000430086 DCAF8L1A6NGE4 600 aa19.48■□□□□ 0.71
CCDC88A-206ENST00000430086 EHMT2Q96KQ7 1210 aa19.39■□□□□ 0.69
CCDC88A-206ENST00000430086 SLC4A2P04920 1241 aa19.24■□□□□ 0.67
CCDC88A-206ENST00000430086 ZBTB22O15209 634 aa19.19■□□□□ 0.66
CCDC88A-206ENST00000430086 CSRNP3Q8WYN3 585 aa19.19■□□□□ 0.66
CCDC88A-206ENST00000430086 FOXD4L1Q9NU39 408 aa19.18■□□□□ 0.66
CCDC88A-206ENST00000430086 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.1■□□□□ 0.654e-8■□□□□ 8.6
CCDC88A-206ENST00000430086 MYCNP04198 464 aaPredicted RBP18.87■□□□□ 0.61
CCDC88A-206ENST00000430086 U3KPZ7 1027 aaPredicted RBP18.83■□□□□ 0.6
CCDC88A-206ENST00000430086 RNF39Q9H2S5 420 aa18.74■□□□□ 0.59
CCDC88A-206ENST00000430086 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.66■□□□□ 0.58
CCDC88A-206ENST00000430086 HNRNPUL2Q1KMD3 747 aaKnown RBP18.66■□□□□ 0.58
CCDC88A-206ENST00000430086 SAMD1Q6SPF0 538 aaPredicted RBP18.59■□□□□ 0.57
CCDC88A-206ENST00000430086 ATXN8OSP0DMR3 200 aa18.55■□□□□ 0.56
CCDC88A-206ENST00000430086 C1QBPQ07021 282 aaKnown RBP18.54■□□□□ 0.56
CCDC88A-206ENST00000430086 APLP2Q06481 763 aa18.44■□□□□ 0.54
CCDC88A-206ENST00000430086 ATF5Q9Y2D1 282 aaPredicted RBP18.32■□□□□ 0.52
CCDC88A-206ENST00000430086 SPINK5Q9NQ38 1064 aaPredicted RBP18.24■□□□□ 0.51
CCDC88A-206ENST00000430086 CAPN15O75808 1086 aa18.15■□□□□ 0.5
CCDC88A-206ENST00000430086 ZNF219Q9P2Y4 722 aaPredicted RBP18.14■□□□□ 0.49
CCDC88A-206ENST00000430086 CACNB1Q02641 598 aaPredicted RBP18.13■□□□□ 0.49
CCDC88A-206ENST00000430086 TRHP20396 242 aaPredicted RBP18.09■□□□□ 0.49
CCDC88A-206ENST00000430086 DSG3P32926 999 aa17.87■□□□□ 0.45
CCDC88A-206ENST00000430086 POLA2Q14181 598 aa17.85■□□□□ 0.45
CCDC88A-206ENST00000430086 ABCB7O75027 752 aa17.8■□□□□ 0.44
CCDC88A-206ENST00000430086 ZBTB12Q9Y330 459 aaPredicted RBP17.61■□□□□ 0.41
CCDC88A-206ENST00000430086 FBLN2P98095 1184 aa17.56■□□□□ 0.4
CCDC88A-206ENST00000430086 MKRN4PQ13434 485 aaPredicted RBP17.55■□□□□ 0.4
CCDC88A-206ENST00000430086 FKBP8Q14318 412 aa17.3■□□□□ 0.36
CCDC88A-206ENST00000430086 OSCARQ8IYS5 282 aa17.22■□□□□ 0.35
CCDC88A-206ENST00000430086 SPDYE4A6NLX3 237 aa17.2■□□□□ 0.34
CCDC88A-206ENST00000430086 SPDYE2BA6NHP3 402 aa17.14■□□□□ 0.33
CCDC88A-206ENST00000430086 SPDYE6P0CI01 402 aa17.14■□□□□ 0.33
CCDC88A-206ENST00000430086 SPDYE2Q495Y8 402 aa17.14■□□□□ 0.33
CCDC88A-206ENST00000430086 ZNF692Q9BU19 519 aaPredicted RBP17.05■□□□□ 0.32
CCDC88A-206ENST00000430086 RBM42Q9BTD8 480 aaKnown RBP17.04■□□□□ 0.32
CCDC88A-206ENST00000430086 SSUH2Q9Y2M2 353 aa17.02■□□□□ 0.32
CCDC88A-206ENST00000430086 PROM2Q8N271 834 aa17■□□□□ 0.31
CCDC88A-206ENST00000430086 AKT1S1Q96B36 256 aa16.86■□□□□ 0.29
CCDC88A-206ENST00000430086 PABPN1Q86U42 306 aaKnown RBP eCLIP16.83■□□□□ 0.28
CCDC88A-206ENST00000430086 FBXO3Q9UK99 471 aa16.71■□□□□ 0.27
CCDC88A-206ENST00000430086 REM2Q8IYK8 340 aaPredicted RBP16.67■□□□□ 0.26
CCDC88A-206ENST00000430086 STAG3Q9UJ98 1225 aa16.62■□□□□ 0.25
CCDC88A-206ENST00000430086 SPDYE1Q8NFV5 336 aaPredicted RBP16.59■□□□□ 0.25
CCDC88A-206ENST00000430086 PITPNM1O00562 1244 aa16.46■□□□□ 0.23
CCDC88A-206ENST00000430086 VASPP50552 380 aaPredicted RBP16.46■□□□□ 0.23
CCDC88A-206ENST00000430086 CLEC11AQ9Y240 323 aa16.45■□□□□ 0.22
CCDC88A-206ENST00000430086 PRR29P0C7W0 189 aa16.36■□□□□ 0.21
CCDC88A-206ENST00000430086 MIER1Q8N108 512 aa16.28■□□□□ 0.2
CCDC88A-206ENST00000430086 PLCD3Q8N3E9 789 aa16.27■□□□□ 0.2
CCDC88A-206ENST00000430086 CHRDL2Q6WN34 429 aa16.26■□□□□ 0.19
CCDC88A-206ENST00000430086 IFNLR1Q8IU57 520 aaPredicted RBP16.24■□□□□ 0.19
CCDC88A-206ENST00000430086 PLEKHG5O94827 1062 aa16.21■□□□□ 0.19
CCDC88A-206ENST00000430086 CREBZFQ9NS37 354 aa16.19■□□□□ 0.18
CCDC88A-206ENST00000430086 FXR2P51116 673 aaKnown RBP eCLIP16.17■□□□□ 0.18
CCDC88A-206ENST00000430086 ZBTB47Q9UFB7 747 aaPredicted RBP16.13■□□□□ 0.17
CCDC88A-206ENST00000430086 KLHL34Q8N239 644 aa16.11■□□□□ 0.17
CCDC88A-206ENST00000430086 PIP4P2Q8N4L2 257 aa16.08■□□□□ 0.16
CCDC88A-206ENST00000430086 MNX1P50219 401 aaPredicted RBP16.06■□□□□ 0.16
CCDC88A-206ENST00000430086 PRKAR2AP13861 404 aaKnown RBP16.05■□□□□ 0.16
CCDC88A-206ENST00000430086 CHADLQ6NUI6 762 aa16.04■□□□□ 0.16
CCDC88A-206ENST00000430086 SPOCK2Q92563 424 aa16.04■□□□□ 0.16
CCDC88A-206ENST00000430086 POTEHQ6S545 545 aa16.02■□□□□ 0.16
CCDC88A-206ENST00000430086 AMER1Q5JTC6 1135 aaPredicted RBP16.01■□□□□ 0.15
CCDC88A-206ENST00000430086 FARP1Q9Y4F1 1045 aaPredicted RBP15.95■□□□□ 0.14
CCDC88A-206ENST00000430086 NPM1P06748 294 aaKnown RBP eCLIP15.93■□□□□ 0.14
CCDC88A-206ENST00000430086 RTN4Q9NQC3 1192 aaKnown RBP15.92■□□□□ 0.14
CCDC88A-206ENST00000430086 NUBP1P53384 320 aa15.89■□□□□ 0.13
CCDC88A-206ENST00000430086 RASEFQ8IZ41 740 aa15.77■□□□□ 0.12
CCDC88A-206ENST00000430086 GSE1Q14687 1217 aa15.75■□□□□ 0.11
CCDC88A-206ENST00000430086 PKD2Q13563 968 aa15.74■□□□□ 0.11
CCDC88A-206ENST00000430086 FAM212AQ96EL1 285 aa15.74■□□□□ 0.11
CCDC88A-206ENST00000430086 CIZ1Q9ULV3 898 aaPredicted RBP15.72■□□□□ 0.11
CCDC88A-206ENST00000430086 DCAF8Q5TAQ9 597 aa15.71■□□□□ 0.11
CCDC88A-206ENST00000430086 TRIM41Q8WV44 630 aa15.66■□□□□ 0.1
CCDC88A-206ENST00000430086 TSPYL2Q9H2G4 693 aaPredicted RBP15.62■□□□□ 0.09
CCDC88A-206ENST00000430086 C19orf67A6NJJ6 358 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms